Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HLV59_RS01515 Genome accession   NZ_CP053391
Coordinates   319957..321015 (+) Length   352 a.a.
NCBI ID   WP_016143662.1    Uniprot ID   R8YYR3
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314957..326015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01500 - 316060..316392 (+) 333 WP_016143665.1 hypothetical protein -
  HLV59_RS01505 - 316395..317219 (+) 825 WP_171429186.1 putative RNA methyltransferase -
  HLV59_RS01510 ponA 317235..319796 (-) 2562 WP_171429187.1 penicillin-binding protein PBP1a -
  HLV59_RS01515 pilM 319957..321015 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  HLV59_RS01520 pilN 321015..321656 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  HLV59_RS01525 pilO 321653..322432 (+) 780 WP_061875199.1 type 4a pilus biogenesis protein PilO Machinery gene
  HLV59_RS01530 pilP 322444..322971 (+) 528 WP_171429189.1 pilus assembly protein PilP Machinery gene
  HLV59_RS01535 pilQ 323034..325199 (+) 2166 WP_171429190.1 type IV pilus secretin PilQ Machinery gene
  HLV59_RS01540 aroK 325211..325780 (+) 570 WP_016142884.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39032.61 Da        Isoelectric Point: 4.4217

>NTDB_id=444670 HLV59_RS01515 WP_016143662.1 319957..321015(+) (pilM) [Acinetobacter lactucae isolate QL-1]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALTPLPENSVVEKNILNPEAVAEALERAMNLANPQTSNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVERAFSVFADSLPMGASTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEILEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDIQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=444670 HLV59_RS01515 WP_016143662.1 319957..321015(+) (pilM) [Acinetobacter lactucae isolate QL-1]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTGGAAAGCTATGCTTTAACACCTTTACCTGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCTGAAGCAGTTGCAGAAGCTTTGGAAAGGGCGATGAATTTAGCAAATCCCCAAACCAGTAATGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAACGATGATGAGCGTGAAGTTCAGAT
TCGATTAGATGCGGAGCAATATATACCGTTCCCTTTGGATGAGGTGAGCCTTGATTTTGAGGTTTTACCAGATCGACTGC
CAAATCCAAATCGTGTGAATGTACTTTTAGTCGCAACGCGCACAGAAAATGTTGAAACACGCGTAGAAGTACTGGAACTG
GTAGATTTAACGCCTAAACTTGCTGATGTCGAGAGTTATGCTGTCGAGCGTGCTTTTAGTGTGTTTGCTGATAGCTTACC
CATGGGTGCAAGTACCATTGGTATTTTAGATATTGGCCATACCATGACCACATTATCGGTTATGCAAAATGGCAAAATCA
TTTACACCCGTGAACAAGTCTTTGGCGGTAAACAGCTTACTCTCGAAATTCAAAGCCGTTATGGTTTGTCATTAGAAGAG
GCGGGACGGGCTAAAAAAGAACGTTCTTTACCAGATGATTATGACATCGAAATCTTAGAACCATTTCTAGATGCTGTAGT
GCAGCAAGCTGCTAGATCTCTACAATTTTTCTTCTCTTCATCCCAATTCAATGAAATAGATCATATTTTGCTTGCAGGTG
GTAATGCCAATATTCCAGGCCTTGCGAAATTGTTGCAGCAAAAACTTGGTTACCGAGTCACTATTGCTAATCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGATATTCAAAAAATTGAAAATGATGCCTCATCATTAATGGTGGCGTGTGGCTTGGC
CTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8YYR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

95.739

100

0.957
  comM Acinetobacter nosocomialis M2

95.739

100

0.957
  comM Acinetobacter baylyi ADP1

81.534

100

0.815
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42