Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   HLV59_RS01525 Genome accession   NZ_CP053391
Coordinates   321653..322432 (+) Length   259 a.a.
NCBI ID   WP_061875199.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316653..327432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01510 ponA 317235..319796 (-) 2562 WP_171429187.1 penicillin-binding protein PBP1a -
  HLV59_RS01515 pilM 319957..321015 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  HLV59_RS01520 pilN 321015..321656 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  HLV59_RS01525 pilO 321653..322432 (+) 780 WP_061875199.1 type 4a pilus biogenesis protein PilO Machinery gene
  HLV59_RS01530 pilP 322444..322971 (+) 528 WP_171429189.1 pilus assembly protein PilP Machinery gene
  HLV59_RS01535 pilQ 323034..325199 (+) 2166 WP_171429190.1 type IV pilus secretin PilQ Machinery gene
  HLV59_RS01540 aroK 325211..325780 (+) 570 WP_016142884.1 shikimate kinase AroK -
  HLV59_RS01545 aroB 325809..326891 (+) 1083 WP_171429192.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29348.30 Da        Isoelectric Point: 6.0348

>NTDB_id=444672 HLV59_RS01525 WP_061875199.1 321653..322432(+) (pilO) [Acinetobacter lactucae isolate QL-1]
MSPHELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDSKSDIPVLNYSIKAKTYRYMGAGENQNNNDPQGGNGETQA
NTSDSHNVNIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=444672 HLV59_RS01525 WP_061875199.1 321653..322432(+) (pilO) [Acinetobacter lactucae isolate QL-1]
ATGAGTCCTCATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACTTTAGAAAAATTTCT
TCAGCAATTTAATACACTCGATATGAACAGCTATGGTAGTTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCCTTGGGCTATTTTGTTGCTATTCAGCCAAAGCTCCAAGCAATTGATAATGCTCAGGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGTAATTTGCAGCAATATCAGCTTCAACTTCAAGAAAT
GCAAGCCAACTTCAACCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCG
ATTACGATTGAGGCAACAGGCGATTATCACGCTTTCGGTGCTTTCGTGAGCAGTATTGCGGCATTACCGCGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATAGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGCGCTGGGGAAAACCAAAATAATAATGACCCACAAGGGGGAAATGGTGAGACGCAAGCC
AACACCTCCGATAGCCATAATGTAAATATTCCTTCTATCAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

69.388

94.595

0.656