Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HLV59_RS01520 Genome accession   NZ_CP053391
Coordinates   321015..321656 (+) Length   213 a.a.
NCBI ID   WP_016143661.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316015..326656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01500 - 316060..316392 (+) 333 WP_016143665.1 hypothetical protein -
  HLV59_RS01505 - 316395..317219 (+) 825 WP_171429186.1 putative RNA methyltransferase -
  HLV59_RS01510 ponA 317235..319796 (-) 2562 WP_171429187.1 penicillin-binding protein PBP1a -
  HLV59_RS01515 pilM 319957..321015 (+) 1059 WP_016143662.1 pilus assembly protein PilM Machinery gene
  HLV59_RS01520 pilN 321015..321656 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  HLV59_RS01525 pilO 321653..322432 (+) 780 WP_061875199.1 type 4a pilus biogenesis protein PilO Machinery gene
  HLV59_RS01530 pilP 322444..322971 (+) 528 WP_171429189.1 pilus assembly protein PilP Machinery gene
  HLV59_RS01535 pilQ 323034..325199 (+) 2166 WP_171429190.1 type IV pilus secretin PilQ Machinery gene
  HLV59_RS01540 aroK 325211..325780 (+) 570 WP_016142884.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23951.38 Da        Isoelectric Point: 5.4186

>NTDB_id=444671 HLV59_RS01520 WP_016143661.1 321015..321656(+) (pilN) [Acinetobacter lactucae isolate QL-1]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFSGWFYLNQKLSDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=444671 HLV59_RS01520 WP_016143661.1 321015..321656(+) (pilN) [Acinetobacter lactucae isolate QL-1]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTCGGGAGCAGCGCAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAACTCAGTGATCAAGAACAAGCGA
ATCAACTCATTATCAGTACAAACCAGAATCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGTATGAAGCTCATCCAAGGATTACAAAGTCAGCGTCCAGTCGTTGTACGTTTGGTGGATGAATTGGTACG
CGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAATTCTTTCTTAGCG
ACTGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTCGAGTAGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGAGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGTAGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685