Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   HKO16_RS16765 Genome accession   NZ_CP053098
Coordinates   3528127..3528867 (-) Length   246 a.a.
NCBI ID   WP_000076102.1    Uniprot ID   A0A1E3MBI9
Organism   Acinetobacter baumannii ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3523127..3533867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16745 (HKO16_16770) aroB 3523664..3524746 (-) 1083 WP_001193998.1 3-dehydroquinate synthase -
  HKO16_RS16750 (HKO16_16775) aroK 3524775..3525344 (-) 570 WP_000643712.1 shikimate kinase AroK -
  HKO16_RS16755 (HKO16_16780) pilQ 3525356..3527521 (-) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  HKO16_RS16760 (HKO16_16785) pilP 3527589..3528116 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HKO16_RS16765 (HKO16_16790) pilO 3528127..3528867 (-) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  HKO16_RS16770 (HKO16_16795) pilN 3528864..3529505 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  HKO16_RS16775 (HKO16_16800) pilM 3529505..3530563 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HKO16_RS16780 (HKO16_16805) ponA 3530726..3533281 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27849.61 Da        Isoelectric Point: 4.8357

>NTDB_id=443005 HKO16_RS16765 WP_000076102.1 3528127..3528867(-) (pilO) [Acinetobacter baumannii ATCC 17978]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=443005 HKO16_RS16765 WP_000076102.1 3528127..3528867(-) (pilO) [Acinetobacter baumannii ATCC 17978]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
TATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCCTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3MBI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683