Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HKO16_RS16640 Genome accession   NZ_CP053098
Coordinates   3501279..3502097 (-) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3496279..3507097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16625 (HKO16_16650) pilE 3496496..3496921 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  HKO16_RS16630 (HKO16_16655) pilY2 3496918..3497400 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  HKO16_RS16635 (HKO16_16660) pilY1 3497413..3501267 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  HKO16_RS16640 (HKO16_16665) pilX 3501279..3502097 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HKO16_RS16645 (HKO16_16670) pilW 3502094..3503095 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  HKO16_RS16650 (HKO16_16675) pilV 3503096..3503656 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HKO16_RS16655 (HKO16_16680) fimU 3503650..3504123 (-) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HKO16_RS16660 (HKO16_16685) ispH 3504293..3505243 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HKO16_RS16665 (HKO16_16690) gmk 3505366..3505995 (+) 630 WP_000015937.1 guanylate kinase -
  HKO16_RS16670 (HKO16_16695) rpoZ 3506068..3506346 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HKO16_RS16675 (HKO16_16700) - 3506385..3506515 (+) 131 Protein_3279 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=442999 HKO16_RS16640 WP_000149378.1 3501279..3502097(-) (pilX) [Acinetobacter baumannii ATCC 17978]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=442999 HKO16_RS16640 WP_000149378.1 3501279..3502097(-) (pilX) [Acinetobacter baumannii ATCC 17978]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989