Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HHK01_RS12920 Genome accession   NZ_CP052135
Coordinates   2602520..2603125 (+) Length   201 a.a.
NCBI ID   WP_170008158.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2597520..2608125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS12895 gap 2597844..2598851 (-) 1008 WP_170008154.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  HHK01_RS12900 - 2598921..2599940 (-) 1020 WP_170008155.1 sugar-binding transcriptional regulator -
  HHK01_RS12905 - 2600415..2600657 (-) 243 WP_170008156.1 glutaredoxin family protein -
  HHK01_RS12910 rpoN 2600787..2602052 (-) 1266 WP_170008157.1 RNA polymerase factor sigma-54 -
  HHK01_RS12920 clpP 2602520..2603125 (+) 606 WP_170008158.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  HHK01_RS12925 - 2603175..2603429 (-) 255 WP_170008159.1 HPr family phosphocarrier protein -
  HHK01_RS12930 whiA 2603472..2604416 (-) 945 WP_170008160.1 DNA-binding protein WhiA -
  HHK01_RS12935 yvcK 2604373..2605395 (-) 1023 WP_170008161.1 YvcK family protein -
  HHK01_RS12940 rapZ 2605401..2606300 (-) 900 WP_170008162.1 RNase adapter RapZ -
  HHK01_RS12945 - 2606315..2606785 (-) 471 WP_170008163.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22254.59 Da        Isoelectric Point: 5.7540

>NTDB_id=441455 HHK01_RS12920 WP_170008158.1 2602520..2603125(+) (clpP) [Bacillus fonticola strain CS13]
MPLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTPIDDHVANSVVAQLLFLESENPEKDISIYVNSPGGSITAGMAIYDT
MQFIRPDVQTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSMREKLNTILSERTGQ
PLEVIARDTERDNFMSADRAKEYGMIDHIVTRNSINKDKKE

Nucleotide


Download         Length: 606 bp        

>NTDB_id=441455 HHK01_RS12920 WP_170008158.1 2602520..2603125(+) (clpP) [Bacillus fonticola strain CS13]
ATGCCTTTGATTCCTACGGTTATTGAACAAACAAATCGCGGTGAGCGTGCGTATGATATTTACTCTCGCTTGCTAAAAGA
TCGCATCATCATGCTTGGTACTCCGATAGATGATCACGTTGCAAACTCAGTCGTTGCGCAGCTGCTATTCTTAGAGTCAG
AAAACCCGGAGAAAGATATCTCCATTTACGTGAACTCCCCAGGTGGAAGTATTACAGCTGGTATGGCGATTTATGACACG
ATGCAATTCATTAGACCTGACGTGCAAACAATCTGTATCGGAATGGCTGCTTCTATGGGCGCGTTCTTGCTAGCTGCCGG
CACGAAGGGTAAGCGGTATGCTCTTCCGAATAGTGAAGTGATGATTCACCAACCACTCGGTGGTGCACAAGGGCAAGCAA
CTGAAATTGAAATTGCTGCTAAACGTATTTTGTCCATGCGTGAGAAGCTAAACACCATTCTTTCAGAGCGCACTGGCCAA
CCGCTTGAAGTGATTGCACGCGACACAGAGCGAGACAACTTCATGTCTGCAGATAGAGCGAAAGAGTATGGCATGATCGA
TCATATTGTGACGCGTAACTCTATTAACAAAGACAAAAAAGAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

81.5

99.502

0.811
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.969

95.025

0.627
  clpP Streptococcus thermophilus LMD-9

58.974

97.015

0.572
  clpP Streptococcus thermophilus LMG 18311

58.974

97.015

0.572
  clpP Streptococcus pneumoniae TIGR4

58.673

97.512

0.572
  clpP Streptococcus pneumoniae Rx1

58.673

97.512

0.572
  clpP Streptococcus pneumoniae D39

58.673

97.512

0.572
  clpP Streptococcus pneumoniae R6

58.673

97.512

0.572
  clpP Lactococcus lactis subsp. cremoris KW2

58.462

97.015

0.567
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.41

97.015

0.547
  clpP Streptococcus pyogenes JRS4

56.41

97.015

0.547
  clpP Streptococcus pyogenes MGAS315

56.41

97.015

0.547
  clpP Streptococcus mutans UA159

54.359

97.015

0.527