Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HHI31_RS03265 Genome accession   NZ_CP051880
Coordinates   689175..689549 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. venerealis strain P4531     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 684175..694549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHI31_RS03240 (HHI31_03240) tatB 684838..685293 (+) 456 WP_198803424.1 Sec-independent protein translocase protein TatB -
  HHI31_RS03245 (HHI31_03245) tatC 685293..686048 (+) 756 WP_198803425.1 twin-arginine translocase subunit TatC -
  HHI31_RS03250 (HHI31_03250) queA 686045..687064 (+) 1020 WP_127349035.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HHI31_RS03255 (HHI31_03255) - 687074..688318 (+) 1245 WP_198803426.1 hypothetical protein -
  HHI31_RS03260 (HHI31_03260) - 688304..689167 (-) 864 WP_198803427.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HHI31_RS03265 (HHI31_03265) dprB 689175..689549 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  HHI31_RS03270 (HHI31_03270) dprA 689546..690313 (-) 768 WP_198803428.1 DNA-processing protein DprA Machinery gene
  HHI31_RS03275 (HHI31_03275) - 690297..691382 (-) 1086 WP_198803429.1 divergent polysaccharide deacetylase family protein -
  HHI31_RS03280 (HHI31_03280) ilvC 691461..692483 (-) 1023 WP_198803430.1 ketol-acid reductoisomerase -
  HHI31_RS03285 (HHI31_03285) - 692630..693442 (+) 813 WP_198803431.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=441304 HHI31_RS03265 WP_002849740.1 689175..689549(-) (dprB) [Campylobacter fetus subsp. venerealis strain P4531]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=441304 HHI31_RS03265 WP_002849740.1 689175..689549(-) (dprB) [Campylobacter fetus subsp. venerealis strain P4531]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAACATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGTGAAGCTAGCGAACTATCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524