Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HHI31_RS03270 Genome accession   NZ_CP051880
Coordinates   689546..690313 (-) Length   255 a.a.
NCBI ID   WP_198803428.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. venerealis strain P4531     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 684546..695313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHI31_RS03240 (HHI31_03240) tatB 684838..685293 (+) 456 WP_198803424.1 Sec-independent protein translocase protein TatB -
  HHI31_RS03245 (HHI31_03245) tatC 685293..686048 (+) 756 WP_198803425.1 twin-arginine translocase subunit TatC -
  HHI31_RS03250 (HHI31_03250) queA 686045..687064 (+) 1020 WP_127349035.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HHI31_RS03255 (HHI31_03255) - 687074..688318 (+) 1245 WP_198803426.1 hypothetical protein -
  HHI31_RS03260 (HHI31_03260) - 688304..689167 (-) 864 WP_198803427.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HHI31_RS03265 (HHI31_03265) dprB 689175..689549 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  HHI31_RS03270 (HHI31_03270) dprA 689546..690313 (-) 768 WP_198803428.1 DNA-processing protein DprA Machinery gene
  HHI31_RS03275 (HHI31_03275) - 690297..691382 (-) 1086 WP_198803429.1 divergent polysaccharide deacetylase family protein -
  HHI31_RS03280 (HHI31_03280) ilvC 691461..692483 (-) 1023 WP_198803430.1 ketol-acid reductoisomerase -
  HHI31_RS03285 (HHI31_03285) - 692630..693442 (+) 813 WP_198803431.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28297.44 Da        Isoelectric Point: 5.8588

>NTDB_id=441305 HHI31_RS03270 WP_198803428.1 689546..690313(-) (dprA) [Campylobacter fetus subsp. venerealis strain P4531]
MNFITDILSLKKLKKPVNKLYYKGNLELLNFPKVAIVGSRKCTSYTKNIVLSLASTLKNYGICVVSGAAIGTDIHAHEGA
FPNTIAVFGNGLNNIYPAQNSKMIEKIYKDALAFSEYEPNTFATPWSFLERNRIVVALSDAVIIAEADIKSGSMSSARLA
LDMGIPLFVLPQRFNESNGTNDLLSKNRANLIADFDEFASKFGSLNSDLSKDDVLEFIKINQNFDECYARFGDVLYEYEL
DGKISIDGVYIRILS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=441305 HHI31_RS03270 WP_198803428.1 689546..690313(-) (dprA) [Campylobacter fetus subsp. venerealis strain P4531]
ATGAACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAAACTATATTATAAAGGAAATTTAGA
ACTCTTAAATTTCCCCAAAGTAGCGATAGTTGGCTCGAGAAAATGTACTTCTTATACAAAAAATATTGTTTTGAGTTTAG
CCTCTACTCTTAAAAATTATGGTATTTGCGTAGTTAGCGGAGCGGCTATAGGTACCGATATACATGCTCACGAAGGCGCT
TTTCCAAATACCATCGCAGTCTTTGGAAATGGACTTAATAATATATATCCGGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGATGCATTGGCTTTTAGCGAGTATGAACCCAATACTTTTGCGACTCCTTGGAGTTTTTTAGAAAGAAATAGAA
TAGTCGTAGCTCTAAGCGACGCCGTGATCATAGCAGAAGCGGATATTAAAAGCGGATCAATGTCTAGCGCAAGACTCGCT
TTGGATATGGGAATTCCTCTTTTTGTATTGCCTCAAAGATTTAATGAGAGCAATGGAACAAATGATCTGCTTAGTAAAAA
TAGGGCGAATTTAATAGCCGATTTTGATGAGTTTGCTTCTAAATTCGGAAGTTTAAATAGTGATTTGAGTAAAGACGATG
TTTTGGAATTTATAAAAATAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGTTTTGTATGAATACGAGCTG
GATGGTAAAATTTCTATAGACGGAGTATATATAAGGATTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.745

92.157

0.514
  dprA Helicobacter pylori 26695

47.917

94.118

0.451