Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IOD14_RS28700 Genome accession   NZ_CP063808
Coordinates   6405758..6406393 (+) Length   211 a.a.
NCBI ID   WP_123987709.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6400758..6411393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS28670 (IOD14_28670) - 6401143..6402864 (-) 1722 WP_212671925.1 urease subunit alpha -
  IOD14_RS28675 (IOD14_28675) - 6402857..6403168 (-) 312 WP_123987704.1 urease subunit beta -
  IOD14_RS28680 (IOD14_28680) - 6403178..6403480 (-) 303 WP_123987705.1 urease subunit gamma -
  IOD14_RS28685 (IOD14_28685) - 6403613..6404242 (-) 630 WP_123987706.1 TetR/AcrR family transcriptional regulator -
  IOD14_RS28690 (IOD14_28690) - 6404370..6405356 (+) 987 WP_212671926.1 ABC transporter permease -
  IOD14_RS28695 (IOD14_28695) - 6405418..6405693 (-) 276 WP_123987708.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  IOD14_RS28700 (IOD14_28700) clpP 6405758..6406393 (+) 636 WP_123987709.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IOD14_RS28705 (IOD14_28705) - 6406401..6406706 (+) 306 WP_123987710.1 hypothetical protein -
  IOD14_RS28710 (IOD14_28710) - 6407222..6407695 (+) 474 WP_037710218.1 C40 family peptidase -
  IOD14_RS28715 (IOD14_28715) - 6407790..6408383 (+) 594 WP_212671927.1 DUF6328 family protein -
  IOD14_RS28720 (IOD14_28720) - 6408456..6408914 (-) 459 WP_123987712.1 ATP-binding protein -
  IOD14_RS28725 (IOD14_28725) - 6409129..6409989 (+) 861 WP_123987713.1 helix-turn-helix transcriptional regulator -
  IOD14_RS28730 (IOD14_28730) - 6409999..6410220 (+) 222 WP_212671928.1 DUF397 domain-containing protein -
  IOD14_RS28735 (IOD14_28735) - 6410260..6411387 (-) 1128 WP_123987715.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22998.98 Da        Isoelectric Point: 4.9065

>NTDB_id=440899 IOD14_RS28700 WP_123987709.1 6405758..6406393(+) (clpP) [Streptomyces sp. A2-16]
MTRPTARYVLPEFHERTSFGQKTMDPYSKLLEERIVFLGTPIDDTSANDLMAQFMYLEYQDPDRDIALYINSPGGSFSAM
SAIYDTMQYVSCDVETTCLGQAGSSAAVLLAAGTPGKRSVLPGARVVIHQPALSEPIQGQASDLAIQADELIRVRGRLEE
MLVRHTGRSPEQVSADIERDKILDAQGALDHGLADAIVPSRKSSRTTPGAR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=440899 IOD14_RS28700 WP_123987709.1 6405758..6406393(+) (clpP) [Streptomyces sp. A2-16]
ATGACCCGACCGACCGCCCGTTACGTCCTGCCCGAGTTCCATGAGCGCACGAGCTTCGGGCAGAAGACGATGGATCCGTA
CTCGAAGCTGCTGGAGGAGCGGATCGTCTTCCTCGGGACACCGATCGACGACACCTCGGCGAACGATCTGATGGCGCAGT
TCATGTACCTCGAGTACCAGGACCCGGACCGGGACATCGCGCTGTACATCAACTCCCCCGGCGGCTCGTTCAGCGCGATG
TCGGCGATCTACGACACGATGCAGTACGTCAGTTGCGACGTGGAGACGACCTGCCTCGGACAGGCGGGGTCCTCCGCGGC
GGTGCTGCTGGCCGCGGGCACCCCGGGCAAGCGGTCCGTGCTGCCGGGCGCCCGAGTGGTGATCCACCAGCCCGCGCTGA
GCGAGCCGATACAGGGGCAGGCCAGCGATCTGGCGATCCAGGCCGACGAGTTGATCCGGGTGCGGGGCCGCCTGGAGGAG
ATGCTGGTGCGGCACACCGGGCGCAGCCCCGAGCAGGTGAGCGCTGACATCGAGCGGGACAAGATCCTGGACGCGCAGGG
CGCCCTGGACCACGGCCTTGCGGACGCGATCGTCCCGAGCCGCAAGTCCTCGCGCACCACGCCGGGCGCGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

44.211

90.047

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

41.753

91.943

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

41.753

91.943

0.384
  clpP Streptococcus pneumoniae R6

41.969

91.469

0.384
  clpP Streptococcus pneumoniae TIGR4

41.969

91.469

0.384
  clpP Streptococcus pneumoniae Rx1

41.969

91.469

0.384
  clpP Streptococcus pneumoniae D39

41.969

91.469

0.384
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.857

89.573

0.384
  clpP Streptococcus mutans UA159

41.237

91.943

0.379
  clpP Streptococcus thermophilus LMG 18311

41.237

91.943

0.379
  clpP Streptococcus thermophilus LMD-9

41.237

91.943

0.379
  clpP Streptococcus pyogenes JRS4

40.722

91.943

0.374
  clpP Streptococcus pyogenes MGAS315

40.722

91.943

0.374