Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IQS17_RS20715 Genome accession   NZ_CP063515
Coordinates   4280948..4281571 (+) Length   207 a.a.
NCBI ID   WP_203075281.1    Uniprot ID   -
Organism   Escherichia coli strain EH01-18-04-A     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4275948..4286571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS17_RS20695 (IQS17_20710) ampG 4276341..4277816 (-) 1476 WP_000098434.1 muropeptide MFS transporter AmpG -
  IQS17_RS20700 (IQS17_20715) yajG 4277860..4278438 (-) 579 WP_001295326.1 lipoprotein -
  IQS17_RS20705 (IQS17_20720) bolA 4278743..4279060 (+) 318 WP_000973448.1 transcriptional regulator BolA -
  IQS17_RS20710 (IQS17_20725) tig 4279404..4280702 (+) 1299 WP_001198388.1 trigger factor -
  IQS17_RS20715 (IQS17_20730) clpP 4280948..4281571 (+) 624 WP_203075281.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  IQS17_RS20720 (IQS17_20735) clpX 4281697..4282971 (+) 1275 WP_000130299.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  IQS17_RS20725 (IQS17_20740) lon 4283159..4285513 (+) 2355 WP_001295325.1 endopeptidase La -
  IQS17_RS20730 (IQS17_20745) hupB 4285722..4285994 (+) 273 WP_001043542.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23200.68 Da        Isoelectric Point: 5.6032

>NTDB_id=440515 IQS17_RS20715 WP_203075281.1 4280948..4281571(+) (clpP) [Escherichia coli strain EH01-18-04-A]
MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSP
GGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLIDSILTHRN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=440515 IQS17_RS20715 WP_203075281.1 4280948..4281571(+) (clpP) [Escherichia coli strain EH01-18-04-A]
ATGTCATACAGCGGCGAACGAGATAACTTTGCACCCCATATGGCGCTGGTGCCGATGGTCATTGAACAGACCTCACGAGG
TGAGCGCTCTTTTGATATCTATTCTCGTCTACTTAAGGAACGCGTCATTTTTCTGACTGGCCAGGTTGAAGACCACATGG
CTAACCTGATTGTGGCGCAGATGCTGTTCCTGGAAGCAGAAAACCCAGAAAAAGATATCTATCTGTACATTAACTCTCCA
GGCGGGGTGATTACTGCCGGGATGTCTATCTATGACACCATGCAGTTTATCAAGCCTGATGTCAGCACCATCTGTATGGG
CCAGGCGGCCTCGATGGGCGCTTTCTTGCTGACTGCAGGGGCAAAAGGTAAACGTTTCTGCCTGCCGAATTCGCGCGTGA
TGATTCACCAGCCGTTGGGCGGCTACCAGGGCCAGGCGACCGATATCGAAATTCATGCCCGTGAAATTCTGAAAGTTAAA
GGGCGCATGAATGAACTTATGGCGCTTCATACGGGTCAATCATTAGAACAGATTGAACGTGATACCGAGCGCGATCGCTT
CCTTTCTGCCCCTGAAGCGGTGGAATACGGTCTGATCGATTCGATTCTGACCCATCGTAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.312

92.754

0.652
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.149

90.821

0.628
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

93.72

0.536
  clpP Streptococcus pneumoniae R6

55.67

93.72

0.522
  clpP Streptococcus pneumoniae TIGR4

55.67

93.72

0.522
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.67

93.72

0.522
  clpP Streptococcus pneumoniae Rx1

55.67

93.72

0.522
  clpP Streptococcus pneumoniae D39

55.67

93.72

0.522
  clpP Streptococcus thermophilus LMD-9

55.44

93.237

0.517
  clpP Streptococcus thermophilus LMG 18311

55.44

93.237

0.517
  clpP Streptococcus pyogenes JRS4

55.789

91.787

0.512
  clpP Streptococcus pyogenes MGAS315

55.789

91.787

0.512
  clpP Streptococcus mutans UA159

54.404

93.237

0.507