Detailed information NTG0439367

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG558_RS00195
• Genome accession: NZ_CP051509
• Coordinates: 34479..35534 (+)
• Length: 351 a.a.
• NCBI ID: WP_202167069.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-009
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29479..40534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG558_RS00165 (HG558_00165)	-	29898..30311 (+)	414	WP_001023005.1	universal stress protein	-
HG558_RS00170 (HG558_00170)	-	30326..30601 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HG558_RS00175 (HG558_00175)	-	30601..32823 (+)	2223	WP_202166719.1	ATP-dependent Clp protease ATP-binding subunit	-
HG558_RS00180 (HG558_00180)	panD	32813..33163 (+)	351	WP_202166720.1	aspartate 1-decarboxylase	-
HG558_RS00185 (HG558_00185)	-	33174..33476 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG558_RS00190 (HG558_00190)	-	33476..34471 (+)	996	WP_202166721.1	PDZ domain-containing protein	-
HG558_RS00195 (HG558_00195)	comB6	34479..35534 (+)	1056	WP_202167069.1	P-type conjugative transfer protein TrbL	Machinery gene
HG558_RS00200 (HG558_00200)	comB7	35550..35663 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HG558_RS00205 (HG558_00205)	comB8	35660..36403 (+)	744	WP_202166722.1	virB8 family protein	Machinery gene
HG558_RS00210 (HG558_00210)	comB9	36403..37368 (+)	966	WP_202166723.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG558_RS00215 (HG558_00215)	comB10	37361..38497 (+)	1137	WP_202166724.1	DNA type IV secretion system protein ComB10	Machinery gene
HG558_RS00220 (HG558_00220)	-	38567..39979 (+)	1413	WP_202166725.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39759.64 Da
• Isoelectric Point: 8.8165

>NTDB_id=439367 HG558_RS00195 WP_202167069.1 34479..35534(+) (comB6) [Helicobacter pylori strain ASHA-009]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITNPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439367 HG558_RS00195 WP_202167069.1 34479..35534(+) (comB6) [Helicobacter pylori strain ASHA-009]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTTGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACGCAGAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGAACCCACCCGCTTCCTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974