Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IPV48_RS29755 Genome accession   NZ_CP063386
Coordinates   6387743..6389236 (+) Length   497 a.a.
NCBI ID   WP_023088684.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST1076_d118limb1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6382743..6394236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV48_RS29725 (IPV48_29705) - 6382864..6383778 (-) 915 WP_003096438.1 fimbrial protein -
  IPV48_RS29730 (IPV48_29710) sutA 6384215..6384532 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  IPV48_RS29735 (IPV48_29715) - 6384610..6385035 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IPV48_RS29740 (IPV48_29720) - 6385296..6386624 (-) 1329 WP_003109815.1 ammonium transporter -
  IPV48_RS29745 (IPV48_29725) glnK 6386664..6387002 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  IPV48_RS29750 (IPV48_29730) - 6387442..6387702 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  IPV48_RS29755 (IPV48_29735) comM 6387743..6389236 (+) 1494 WP_023088684.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IPV48_RS29760 (IPV48_29740) betT 6389361..6391346 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  IPV48_RS29765 (IPV48_29745) pchP 6391389..6392438 (-) 1050 WP_033995004.1 phosphorylcholine phosphatase -
  IPV48_RS29770 (IPV48_29750) - 6392589..6393506 (-) 918 WP_031686225.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53052.95 Da        Isoelectric Point: 7.9587

>NTDB_id=438364 IPV48_RS29755 WP_023088684.1 6387743..6389236(+) (comM) [Pseudomonas aeruginosa strain ST1076_d118limb1]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=438364 IPV48_RS29755 WP_023088684.1 6387743..6389236(+) (comM) [Pseudomonas aeruginosa strain ST1076_d118limb1]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Haemophilus influenzae Rd KW20

55.206

100

0.565
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.25

99.799

0.561
  comM Vibrio cholerae strain A1552

56.25

99.799

0.561
  comM Glaesserella parasuis strain SC1401

55.09

100

0.555
  comM Acinetobacter baylyi ADP1

53.614

100

0.537
  comM Legionella pneumophila str. Paris

50.1

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.469
  comM Helicobacter pylori 26695

38.845

100

0.392