Detailed information NTG0438262

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HGK49_RS00190
• Genome accession: NZ_CP051434
• Coordinates: 32277..33332 (+)
• Length: 351 a.a.
• NCBI ID: WP_202132915.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-004
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27277..38332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGK49_RS00160 (HGK49_00160)	-	27702..28115 (+)	414	WP_097682194.1	universal stress protein	-
HGK49_RS00165 (HGK49_00165)	-	28123..28398 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HGK49_RS00170 (HGK49_00170)	-	28398..30620 (+)	2223	WP_202132914.1	ATP-dependent Clp protease ATP-binding subunit	-
HGK49_RS00175 (HGK49_00175)	panD	30610..30960 (+)	351	WP_029647093.1	aspartate 1-decarboxylase	-
HGK49_RS00180 (HGK49_00180)	-	30971..31264 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HGK49_RS00185 (HGK49_00185)	-	31264..32271 (+)	1008	WP_202133382.1	PDZ domain-containing protein	-
HGK49_RS00190 (HGK49_00190)	comB6	32277..33332 (+)	1056	WP_202132915.1	P-type conjugative transfer protein TrbL	Machinery gene
HGK49_RS00195 (HGK49_00195)	comB7	33348..33461 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HGK49_RS00200 (HGK49_00200)	comB8	33454..34200 (+)	747	WP_202132916.1	virB8 family protein	Machinery gene
HGK49_RS00205 (HGK49_00205)	comB9	34200..35168 (+)	969	WP_202132917.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGK49_RS00210 (HGK49_00210)	comB10	35161..36297 (+)	1137	WP_202132918.1	DNA type IV secretion system protein ComB10	Machinery gene
HGK49_RS00215 (HGK49_00215)	-	36367..37779 (+)	1413	WP_202132919.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39715.73 Da
• Isoelectric Point: 9.0413

>NTDB_id=438262 HGK49_RS00190 WP_202132915.1 32277..33332(+) (comB6) [Helicobacter pylori strain ASHA-004]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=438262 HGK49_RS00190 WP_202132915.1 32277..33332(+) (comB6) [Helicobacter pylori strain ASHA-004]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAATTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTGGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.291	100	0.983