Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IM720_RS31500 Genome accession   NZ_CP063233
Coordinates   6946159..6947676 (+) Length   505 a.a.
NCBI ID   WP_024078071.1    Uniprot ID   A0ACA7PF95
Organism   Pseudomonas fluorescens strain KF1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6941159..6952676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM720_RS31470 (IM720_31470) - 6941719..6942414 (+) 696 WP_069077279.1 HAD family hydrolase -
  IM720_RS31475 (IM720_31475) sutA 6942546..6942872 (-) 327 WP_010567186.1 transcriptional regulator SutA -
  IM720_RS31480 (IM720_31480) - 6942975..6943400 (-) 426 WP_017845176.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IM720_RS31485 (IM720_31485) - 6943612..6944949 (-) 1338 WP_024078070.1 ammonium transporter -
  IM720_RS31490 (IM720_31490) glnK 6944984..6945322 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  IM720_RS31495 (IM720_31495) - 6945745..6946005 (+) 261 WP_010567183.1 accessory factor UbiK family protein -
  IM720_RS31500 (IM720_31500) comM 6946159..6947676 (+) 1518 WP_024078071.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IM720_RS31505 (IM720_31505) - 6947768..6949018 (-) 1251 WP_193689961.1 benzoate/H(+) symporter BenE family transporter -
  IM720_RS31510 (IM720_31510) - 6949161..6950660 (+) 1500 WP_193689962.1 PLP-dependent aminotransferase family protein -
  IM720_RS31515 (IM720_31515) - 6950681..6952657 (-) 1977 WP_102625038.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53885.01 Da        Isoelectric Point: 8.2087

>NTDB_id=437696 IM720_RS31500 WP_024078071.1 6946159..6947676(+) (comM) [Pseudomonas fluorescens strain KF1]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHAPIEPYKSDGLLYSNKPYPDLSEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYMGAPCNRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREITALNPTPQP
GGDTSTASALVAQAREHQQQRQGCANAFLDLSGLRQHCALSKPDEAWLESACERLTLSLRAAHRLLKVARTLADLERADT
IGRNHIAEALQYRPSASSQVDGANG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=437696 IM720_RS31500 WP_024078071.1 6946159..6947676(+) (comM) [Pseudomonas fluorescens strain KF1]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCATATGGCCAA
CGGGTTGCCGTCGCTCACCCTGGTGGGGCTGCCAGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTACGCAGTGCCATCC
TCAACTCAGCGCTGCAATATCCTTCCCGCCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGTGGGCGC
TTTGATCTGGCAATCGCCCTGGGGATCCTGGCGGCGAGTGTGCAGGTGCCGGCGTTGATGCTGGATGACGTGGAGTGCCT
GGGGGAGTTGGCGTTGTCCGGCGAGGTGCGGGCGGTAAAAGGCGTATTGCCCGCCGCATTGGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTGGCATCCGGGCTGAAGGTCATTGCCGTAGATCACCTG
CTGCAGGTGGTGGCACACCTGAATGGGCATGCACCGATTGAGCCCTACAAGTCTGACGGGTTGCTGTATTCGAACAAACC
CTACCCGGACCTGAGTGAAGTTCAGGGCCAGCTGTCAGCCAAGCGCGCACTGCTGATTGCAGCAGCGGGCGCACATAACC
TGCTGTTCAGCGGGCCACCAGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGTTGCTGCCGCCATTGAGTGAA
CAGGAAGCACTGGAAGTGGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGCTGAGCCATTGGCCCCACCGGCCGTTTCG
CCAGCCACACCATTCAGCCTCCGGTCCGGCACTGGTGGGCGGCGGATCGAAACCGCAGCCGGGGGAAATCACCCTGGCCC
ATCATGGAGTGCTGTTCCTGGATGAACTCCCGGAGTTTGATCGCAAGGTGCTGGAGGTCTTGCGCGAGCCACTGGAGTCG
GGGCACATCGTGATTTCCCGCGCCCGTGACCGAGTGCGCTTCCCCGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGTTATATGGGCGCGCCCTGCAACCGATGCCGTTGCACGCCCGAGCAAATCCAACGCTATCGCAACAAACTCT
CCGGGCCCTTGCTGGATCGGATCGACCTGCACTTGACGGTCGCCCGCGAAATCACCGCGCTGAACCCGACCCCACAGCCC
GGCGGCGACACATCCACCGCCTCCGCGCTGGTCGCCCAGGCTCGAGAGCATCAACAGCAGCGCCAGGGTTGCGCCAATGC
GTTCCTGGATCTCTCTGGGTTGCGCCAGCATTGCGCGCTGTCCAAGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCTTGACCCTGTCCCTTCGAGCCGCCCACCGCCTGCTCAAGGTCGCCCGCACTCTGGCGGACCTGGAGCGCGCAGACACT
ATCGGCCGCAACCACATTGCCGAAGCACTGCAATACCGGCCCTCGGCCTCCAGCCAAGTCGACGGCGCAAACGGCTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.713

98.812

0.56
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.313

98.812

0.556
  comM Vibrio cholerae strain A1552

56.313

98.812

0.556
  comM Glaesserella parasuis strain SC1401

55.2

99.01

0.547
  comM Haemophilus influenzae Rd KW20

54.509

98.812

0.539
  comM Acinetobacter baylyi ADP1

53.187

99.406

0.529
  comM Legionella pneumophila str. Paris

51.004

98.614

0.503
  comM Legionella pneumophila strain ERS1305867

51.004

98.614

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.024

99.802

0.469
  comM Helicobacter pylori 26695

37.6

99.01

0.372