Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HEP74_RS04620 Genome accession   NZ_CP051190
Coordinates   1094631..1095689 (+) Length   352 a.a.
NCBI ID   WP_343203498.1    Uniprot ID   -
Organism   Xanthomonas sp. SS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089631..1100689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP74_RS04605 (HEP74_00905) - 1090243..1091061 (-) 819 WP_185815394.1 DUF4375 domain-containing protein -
  HEP74_RS04610 (HEP74_00906) - 1091126..1091773 (-) 648 WP_185815395.1 hypothetical protein -
  HEP74_RS04615 (HEP74_00907) - 1091984..1094413 (-) 2430 WP_185815396.1 penicillin-binding protein 1A -
  HEP74_RS04620 (HEP74_00908) pilM 1094631..1095689 (+) 1059 WP_343203498.1 pilus assembly protein PilM Machinery gene
  HEP74_RS04625 (HEP74_00909) - 1095689..1096456 (+) 768 WP_185815398.1 PilN domain-containing protein -
  HEP74_RS04630 (HEP74_00910) - 1096453..1097127 (+) 675 WP_185815399.1 type 4a pilus biogenesis protein PilO -
  HEP74_RS04635 (HEP74_00911) - 1097124..1097663 (+) 540 WP_185815400.1 pilus assembly protein PilP -
  HEP74_RS04640 (HEP74_00912) - 1097684..1099576 (+) 1893 WP_185815401.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37724.38 Da        Isoelectric Point: 4.4501

>NTDB_id=436747 HEP74_RS04620 WP_343203498.1 1094631..1095689(+) (pilM) [Xanthomonas sp. SS]
MGLIPKSQQPLIGIDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKLIPMPAELDENELEAQVELEAVNYIPYPIDEVNLDFEVLGIIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=436747 HEP74_RS04620 WP_343203498.1 1094631..1095689(+) (pilM) [Xanthomonas sp. SS]
GTGGGGCTTATTCCAAAGAGTCAGCAACCGCTGATCGGTATCGACATCAGTTCGACCGCGGTCAAGCTGTTGCAGCTGTC
CCGTAGCGGCAACCGGTTCCGCGTAGAGCACTACGCCGTGGAACCCTTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGCACCCGCGCCAAGCATGCCGCCGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAGCTCGACGAGAACGAGTTGGAAGCGCAGGTCGA
GCTGGAGGCGGTCAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGACTTCGAGGTGCTGGGGATCATCCCCAACA
ATCCGGAAATGGTGCAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAACGTCGAGCTGCGCCAATCGGCGCTGGAACTCGGC
GGCCTGGTCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGTTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGACGGCGTCGTCGCCCTGGTCGACATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGACGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAATCGGGTCGACCATATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGGCTGCCGGAGATGGTCGAGGAACAACTGGGTGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCATGCGCTGGCCCAGGACGCACCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.429

99.432

0.472