Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP93_RS03620 Genome accession   NZ_CP063121
Coordinates   734824..735336 (+) Length   170 a.a.
NCBI ID   WP_197545164.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 729824..740336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS03600 (INP93_03600) psiE 729907..730323 (+) 417 WP_178165508.1 phosphate-starvation-inducible protein PsiE -
  INP93_RS03605 (INP93_03605) - 730359..731204 (-) 846 WP_049373837.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP93_RS09750 - 731271..731963 (-) 693 Protein_699 penicillin-binding protein 1A -
  INP93_RS03610 (INP93_03610) - 732039..733889 (-) 1851 Protein_700 penicillin-binding protein 1A -
  INP93_RS03615 (INP93_03615) comA 733989..734837 (+) 849 WP_197545163.1 pilus assembly protein PilM Machinery gene
  INP93_RS03620 (INP93_03620) comB 734824..735336 (+) 513 WP_197545164.1 PilN domain-containing protein Machinery gene
  INP93_RS03625 (INP93_03625) comC 735333..735875 (+) 543 WP_049369637.1 hypothetical protein Machinery gene
  INP93_RS03630 (INP93_03630) - 735875..736258 (+) 384 WP_197545165.1 pilus assembly protein PilP -
  INP93_RS03635 (INP93_03635) comE 736260..737642 (+) 1383 WP_049369641.1 type IV pilus secretin PilQ Machinery gene
  INP93_RS03640 (INP93_03640) - 737662..738351 (+) 690 WP_049369643.1 ComF family protein -
  INP93_RS03645 (INP93_03645) nfuA 738466..739050 (+) 585 WP_197545166.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20184.21 Da        Isoelectric Point: 6.2232

>NTDB_id=436745 INP93_RS03620 WP_197545164.1 734824..735336(+) (comB) [Haemophilus parainfluenzae strain M1C130_2]
MLSLNLLPWRLEQHQKAFRRFIWQGLIWLACSVLIVVGLNQLNEQQGQALSQTKEKLTQITHQVHQKRIQVQQLQSNLKE
LNELTEMETEYVYRMLNLLTELPLQQGELDEFTLNAKQVVLSGMTENQQEFEAIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSEPVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=436745 INP93_RS03620 WP_197545164.1 734824..735336(+) (comB) [Haemophilus parainfluenzae strain M1C130_2]
ATGTTAAGCCTTAATCTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCTTTTCGTCGTTTTATATGGCAAGGTTTAAT
TTGGTTAGCTTGCTCAGTGTTGATTGTCGTTGGATTGAACCAACTCAATGAACAACAAGGGCAAGCCCTAAGTCAGACAA
AAGAAAAACTGACACAAATTACTCATCAAGTTCATCAGAAACGCATTCAAGTTCAGCAACTACAAAGTAACTTAAAAGAA
CTGAATGAGCTGACAGAAATGGAGACGGAATATGTGTATCGAATGCTTAATTTATTAACTGAGTTGCCCTTACAACAAGG
TGAGTTAGATGAATTTACGCTCAATGCGAAGCAAGTTGTCCTTTCTGGCATGACGGAAAATCAACAAGAATTTGAAGCAA
TACATCAATTTCTTAAACGCCATTTTACCGAGGTTAATTTAACCAAGTTTCAACCGGTGCAACAACAGTTATTCTTTCAG
TTTGATATTCATTTATCGGAGCCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

41.358

95.294

0.394
  comB Haemophilus influenzae Rd KW20

40.741

95.294

0.388