Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HEP74_RS02260 Genome accession   NZ_CP051190
Coordinates   505776..507341 (-) Length   521 a.a.
NCBI ID   WP_185815011.1    Uniprot ID   -
Organism   Xanthomonas sp. SS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 500776..512341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP74_RS02240 (HEP74_00438) - 501870..502379 (+) 510 WP_255423970.1 preprotein translocase subunit SecD -
  HEP74_RS02245 (HEP74_00439) ubiA 502841..503743 (-) 903 WP_185815009.1 4-hydroxybenzoate octaprenyltransferase -
  HEP74_RS02255 (HEP74_00441) - 504622..505452 (+) 831 WP_185815010.1 alpha/beta fold hydrolase -
  HEP74_RS02260 (HEP74_00442) comM 505776..507341 (-) 1566 WP_185815011.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HEP74_RS02265 (HEP74_00443) - 507355..507624 (-) 270 WP_009595755.1 accessory factor UbiK family protein -
  HEP74_RS02270 (HEP74_00444) - 507801..508139 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  HEP74_RS02275 (HEP74_00445) - 509023..511002 (+) 1980 WP_185815012.1 beta-N-acetylglucosaminidase domain-containing protein -
  HEP74_RS02280 (HEP74_00446) - 511215..511946 (-) 732 WP_185815013.1 hypothetical protein -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 55161.91 Da        Isoelectric Point: 8.2719

>NTDB_id=436746 HEP74_RS02260 WP_185815011.1 505776..507341(-) (comM) [Xanthomonas sp. SS]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAEAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPSRWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRARVEQARQRQLARAGCPNGQLGHSETLRDCRLQPHDEALLEHAIDRLRLSARSLHRILRVARTIADLVESDA
IATAHLAEAIGYRQLDRGESAAPQADAFARASEARRGAIAR

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=436746 HEP74_RS02260 WP_185815011.1 505776..507341(-) (comM) [Xanthomonas sp. SS]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCGACGCAGATCGTCGGCCTGCCCGAAGCCGCGGTGCGCGAATCGCGCGATCGCGTGCGCGCCGCCATCC
TGTGCGCGCAATACGAGTTCCCGGCGCGGCGCATCACCGTCAACCTAGCCCCGGCCGACCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCGATCGCACTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAGCTGCGCGCCGTGGACGGCGTGCTGCCGGCGGCGCTGGCCGCCGCCGAAGCCGGGC
GCACGCTGATCGTGCCGGCTGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGTACCCTG
CTCGAAGTCTGCGCGCTGTTGAACGGCACCAAGACCCTGCCCGCCGCCGAAGCGCTGCCGGCCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCGCAGGCGCGGCGTGCGCTGGAGATCGCCGCGGCCGGTCACCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGACTGGATCCATCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGCCCCGGCGAGATCTCGCTGGCGCATC
GCGGCGTCTTGTTCCTCGACGAACTGCCCGAGTGGAACCGGCACGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACGGTGTCGCGGGCCGCACGCAGCGCCGAATTCCCTGCCCGCTTCCAACTGGTCGCAGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTACCGCGCGCGCATCTCCG
GTCCGTTGCTGGACCGCATCGACCTGCACGTGGACGTACCGCGCCTGCCGCCACAGGCGCTGCGCGCCGATGCCGCCCCC
GGCGAAAGCAGCGCCGCCGTGCGCGCCCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAGACCTTGCGCGACTGCCGCCTGCAACCGCACGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCTTGCACCGTATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGTCGAAAGCGATGCG
ATCGCCACCGCGCACCTGGCCGAGGCGATCGGCTACCGGCAACTGGATCGCGGCGAGTCCGCAGCACCGCAAGCGGACGC
CTTTGCGCGCGCAAGCGAAGCGCGGCGCGGTGCGATAGCGCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.313

95.777

0.539
  comM Vibrio campbellii strain DS40M4

54.98

96.353

0.53
  comM Haemophilus influenzae Rd KW20

54.365

96.737

0.526
  comM Glaesserella parasuis strain SC1401

53.175

96.737

0.514
  comM Legionella pneumophila str. Paris

50.595

96.737

0.489
  comM Legionella pneumophila strain ERS1305867

50.595

96.737

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.365

97.313

0.441