Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HF888_RS15285 Genome accession   NZ_CP051183
Coordinates   3277775..3279865 (-) Length   696 a.a.
NCBI ID   WP_007018232.1    Uniprot ID   -
Organism   Bermanella marisrubri strain RED65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3272775..3284865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF888_RS15270 (HF888_15270) - 3274770..3276122 (-) 1353 WP_007018229.1 AAA family ATPase -
  HF888_RS15275 (HF888_15275) aroB 3276156..3277235 (-) 1080 WP_007018230.1 3-dehydroquinate synthase -
  HF888_RS15280 (HF888_15280) aroK 3277238..3277765 (-) 528 WP_007018231.1 shikimate kinase AroK -
  HF888_RS15285 (HF888_15285) pilQ 3277775..3279865 (-) 2091 WP_007018232.1 type IV pilus secretin PilQ family protein Machinery gene
  HF888_RS15290 (HF888_15290) - 3279866..3280402 (-) 537 WP_007018233.1 pilus assembly protein PilP -
  HF888_RS15295 (HF888_15295) pilO 3280399..3281046 (-) 648 WP_007018234.1 type 4a pilus biogenesis protein PilO -
  HF888_RS15300 (HF888_15300) - 3281046..3281597 (-) 552 WP_007018235.1 PilN domain-containing protein -
  HF888_RS15305 (HF888_15305) pilM 3281597..3282661 (-) 1065 WP_007018236.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 76288.24 Da        Isoelectric Point: 4.3912

>NTDB_id=436705 HF888_RS15285 WP_007018232.1 3277775..3279865(-) (pilQ) [Bermanella marisrubri strain RED65]
MNRKTIITSLLGILALFSTSTSATILQDISFASLPGDKTEIKLSFDGVPPNVSGYTIEQPARIALDLAETESQLKSKYHE
IGMGNARTAVVVGSKSRTRVILNLAELTGYTTRTDGNNLYIMVGNTDQVVKQSENILTDSIASYADTKRQQARKQSRVVD
VDFRRGDLGEGQVKITLTDPNTPVDISQESGRIRVELAGVSMSDEFRRRLDVRDFATPVRFIDATIEEQSPVFFIEPSEE
LYDYLAYQTDNILTVSVKPLTKDEEERIKEERFPYTGEKLSLNFQDIEVRTVLQIIADFTGFNLVASDTVQGNITLRLKN
VPWDQALEIVLKSQGLAKQQMGNVLMVGPADQIANRQKIEMEANKQVEEYAPLRTEFIQVRYAKATDILALVSAEGSLLG
ERGTASVDSRTNTIIIQDTAMSIEGVRRAINILDVPVKQVLIEARIVVASTNVGENLGIRWGGGYGVLDGSDNLTLGGGL
DTVSRFNDGITAGSPVRDISETDSVINFPIAAANASTFAFGLSTDEYVLDLELSALESDGKAEIISQPRVITADGQTARI
QAGTEIPYEQASASGATSIVFKEAVLKLEATPQITPDDRILMDLIINKDAVGEIFNSIPSIDTNELETQVLVNNGETIVL
GGIFQSEDITQVDKTPFFGDLPVIGQLFRRTTRTEDKSELLIFITPRLVKDVISNR

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=436705 HF888_RS15285 WP_007018232.1 3277775..3279865(-) (pilQ) [Bermanella marisrubri strain RED65]
ATGAATAGAAAAACAATTATTACGAGTTTGCTGGGTATTCTAGCATTATTTTCCACTTCAACTAGTGCGACCATATTGCA
GGATATTTCTTTTGCCTCGTTACCTGGGGATAAAACAGAGATAAAGCTGAGTTTCGATGGGGTACCACCCAATGTATCTG
GTTATACTATCGAGCAACCTGCTCGTATAGCTTTGGATCTCGCTGAAACTGAGAGCCAGCTTAAGTCAAAGTATCACGAA
ATTGGAATGGGGAATGCTCGGACTGCGGTTGTAGTTGGCTCTAAGAGTCGCACTCGAGTTATTCTTAATTTAGCTGAGCT
AACTGGATACACCACGCGCACGGATGGTAACAATCTTTATATCATGGTGGGCAACACAGATCAGGTTGTTAAACAAAGCG
AAAATATATTAACGGATAGCATTGCCTCGTACGCAGACACTAAACGGCAGCAGGCGAGAAAGCAAAGCCGAGTCGTTGAT
GTCGATTTTCGTCGTGGAGACCTTGGTGAAGGACAGGTGAAAATTACGCTTACTGATCCGAACACCCCTGTTGATATTTC
ACAGGAAAGTGGCCGTATCAGGGTTGAACTTGCCGGTGTAAGCATGTCTGATGAGTTTCGCCGCCGCTTGGATGTACGCG
ATTTTGCTACGCCAGTACGTTTTATAGATGCAACCATTGAAGAGCAGTCACCAGTCTTCTTCATTGAACCAAGTGAAGAG
CTATACGATTATCTCGCTTACCAGACAGACAATATTTTAACCGTTAGTGTTAAGCCGTTAACCAAGGACGAGGAAGAACG
GATTAAAGAAGAGCGTTTTCCTTATACCGGTGAGAAGCTCTCTCTTAATTTCCAAGATATTGAGGTTCGCACAGTCCTTC
AGATTATCGCAGACTTCACAGGTTTTAACTTGGTCGCCAGTGATACAGTGCAGGGTAATATTACTTTGCGTTTAAAAAAT
GTACCTTGGGATCAGGCGCTTGAGATTGTTTTGAAATCTCAAGGTCTGGCAAAACAGCAAATGGGCAATGTCTTGATGGT
TGGTCCAGCGGATCAAATCGCTAATCGACAAAAGATTGAAATGGAGGCTAATAAACAGGTTGAAGAATACGCTCCTTTGA
GAACCGAATTCATCCAAGTTCGTTATGCGAAAGCGACCGATATTCTTGCTCTTGTTTCAGCTGAAGGCAGCTTGTTGGGT
GAGCGTGGTACAGCCAGTGTTGATTCCCGTACCAATACGATCATTATTCAAGATACCGCAATGTCGATCGAAGGCGTCCG
CAGAGCAATCAATATCTTAGACGTTCCAGTGAAACAGGTCTTGATTGAAGCTCGTATTGTCGTTGCAAGTACGAACGTTG
GTGAAAACTTAGGTATTCGCTGGGGTGGTGGTTATGGTGTTTTAGACGGTTCTGATAACCTAACTTTAGGCGGCGGGCTT
GATACTGTGTCTCGCTTTAATGATGGAATCACTGCCGGTAGTCCAGTTAGGGACATAAGCGAGACTGACAGTGTCATTAA
TTTCCCTATTGCAGCGGCGAATGCGTCTACTTTTGCTTTTGGTTTAAGTACCGATGAGTATGTGTTGGATCTGGAGTTAT
CTGCTCTAGAGTCAGACGGTAAAGCTGAAATTATATCCCAGCCAAGAGTTATCACTGCGGATGGGCAGACTGCTCGTATT
CAGGCGGGTACAGAAATACCGTATGAACAGGCTTCTGCCAGCGGCGCAACCTCAATCGTATTTAAAGAAGCTGTCTTGAA
GCTAGAAGCTACGCCACAAATTACTCCTGACGATCGTATCTTGATGGATTTAATTATCAACAAAGATGCCGTCGGTGAGA
TCTTTAATAGTATCCCGTCGATAGATACCAATGAACTGGAAACTCAGGTCTTAGTTAATAATGGCGAAACCATTGTTTTG
GGTGGTATCTTTCAATCCGAAGACATAACACAAGTTGATAAAACACCGTTCTTTGGTGATCTACCTGTAATCGGACAGTT
GTTCCGCAGGACTACTCGAACGGAAGATAAGAGTGAGCTATTAATCTTTATTACGCCTCGACTGGTTAAAGACGTAATAA
GTAATCGCTAG

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-439)

Bacterial type II and III secretion system protein (Secretin)

(535-690)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

49.218

100

0.497
  pilQ Acinetobacter baumannii D1279779

39.972

100

0.415
  pilQ Acinetobacter baumannii strain A118

39.972

100

0.415
  comQ Acinetobacter baylyi ADP1

39.548

100

0.402
  pilQ Legionella pneumophila strain Lp02

39.035

98.276

0.384
  pilQ Legionella pneumophila strain ERS1305867

39.035

98.276

0.384