Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   INP94_RS06780 Genome accession   NZ_CP063120
Coordinates   1370176..1371516 (+) Length   446 a.a.
NCBI ID   WP_197543096.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1365176..1376516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS06765 (INP94_06765) lrp 1366188..1366667 (+) 480 WP_005695827.1 leucine-responsive transcriptional regulator Lrp -
  INP94_RS06770 (INP94_06770) - 1366670..1369459 (+) 2790 WP_197543094.1 DNA translocase FtsK -
  INP94_RS06775 (INP94_06775) lolA 1369496..1370122 (+) 627 WP_197543095.1 outer membrane lipoprotein chaperone LolA -
  INP94_RS06780 (INP94_06780) rarA 1370176..1371516 (+) 1341 WP_197543096.1 replication-associated recombination protein A Machinery gene
  INP94_RS06785 (INP94_06785) - 1371588..1372670 (-) 1083 WP_005698550.1 extracellular solute-binding protein -
  INP94_RS06790 (INP94_06790) potC 1372804..1373574 (-) 771 WP_049365949.1 spermidine/putrescine ABC transporter permease PotC -
  INP94_RS06795 (INP94_06795) potB 1373574..1374434 (-) 861 WP_193451136.1 spermidine/putrescine ABC transporter permease PotB -
  INP94_RS06800 (INP94_06800) potA 1374418..1375536 (-) 1119 WP_005698520.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50177.99 Da        Isoelectric Point: 6.7313

>NTDB_id=436705 INP94_RS06780 WP_197543096.1 1370176..1371516(+) (rarA) [Haemophilus parainfluenzae strain M1C137_2]
MSNLNFDFAENDFRPLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMASETENGKKLDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKAFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLHEQDKNSVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=436705 INP94_RS06780 WP_197543096.1 1370176..1371516(+) (rarA) [Haemophilus parainfluenzae strain M1C137_2]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCTGCCCGTATGCGACCAACTAATTTGGAGCA
ATATTATGGGCAGACACATTTAATTGGGGAAGGAAAGCCGCTTCGTAAAGCAATTCAAGCTGGGCATGTTCATTCTATGA
TTCTGTGGGGACCGCCAGGTACAGGTAAAACAACACTGGCGGAAATTATTGCGCATCGTATCAATGCAGAAGTTGAACGG
ATTTCCGCGGTGACAAGTGGCGTAAAAGAAATTCGAGAATCAATTGAGCGTGCGAAACAAAATCGACTTGCAGATCGCCA
AACGATTTTATTTGTGGATGAAGTGCATCGCTTTAACAAAAGCCAACAAGATGCGTTTTTACCCCATATAGAAGATGGGA
CGATTATTTTTATTGGTGCCACAACGGAAAATCCTTCCTTTGAATTAAATAATGCCTTACTTTCTCGTGCGAGAGTTTAT
CTTCTTAAGTCATTGACAGTTGCTGAAATCGAACAAGTTCTGCAACAAGCCATTTCTGATCCTGAACGAGGATTAGGTAA
AGAGCGGTTAGTTTTAGAAGAGAATTTGCTACAGGTGTTAGCCGAATATGTGAATGGTGATGCGCGCCTGGCTTTAAATT
GCCTTGAACTGATGGTGGACATGGCTTCTGAAACAGAAAACGGTAAAAAATTAGACCGCACTTTGTTGAAAGAAGTATTG
GGTGAACGACAAGCGCGTTTTGATAAACAAGGCGATCGTTTTTATGATTTGATTTCTGCTTTACATAAATCCATTCGTGG
CTCAGCAGCCGATGCTGCACTTTATTGGTATGCACGAATTATCACTGCTGGTGGGGATCCTCTTTATGTTGCAAGACGTT
TATTAGCGATAGCCTCAGAAGATGTAGGCAATGCTGATCCTCGCGCAATGCAAGTAGCTCTCGCAGCTTGGGATTGTTTT
ACGAGAGTGGGGGCTTATGAAGGAGAGCGAGCCATTGCGCAAGCCATTATTTATTTAGCTGTAGCACCGAAGAGTAATGC
GGTTTACAACGCATTTAATGCAGCCAAACAGCATGCAAAAGCGTTTCCTGATTTTGATGTGCCACCTCATTTACGTAATG
CACCAACGGCTTTAATGAAAGAATTAGGCTATGGTGCTGAATATCGCTATGCACATGATGAGCCAAATGCTTATGCCGCA
GGGGAAAATTACTTCCCACCGGAACTGAAAGATACCCAGTATTATTTCCCAACTAATCGAGGTATGGAAATTCAAATTAA
AGAAAAGCTTGAGCGTTTACATGAACAAGATAAAAACTCCGTAAAGAAACGCTATAAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(187-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.662

94.843

0.386