Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HF888_RS13005 Genome accession   NZ_CP051183
Coordinates   2792851..2794077 (+) Length   408 a.a.
NCBI ID   WP_007016582.1    Uniprot ID   Q1MZP8
Organism   Bermanella marisrubri strain RED65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2787851..2799077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF888_RS12990 (HF888_12990) - 2788769..2790244 (+) 1476 WP_165837002.1 sulfatase-like hydrolase/transferase -
  HF888_RS16675 (HF888_12995) - 2790556..2791020 (+) 465 WP_007016580.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HF888_RS13000 (HF888_13000) pilB 2791159..2792838 (+) 1680 WP_007016581.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HF888_RS13005 (HF888_13005) pilC 2792851..2794077 (+) 1227 WP_007016582.1 type II secretion system F family protein Machinery gene
  HF888_RS13010 (HF888_13010) pilD 2794116..2794976 (+) 861 WP_007016583.1 A24 family peptidase Machinery gene
  HF888_RS13015 (HF888_13015) coaE 2794978..2795583 (+) 606 WP_007016584.1 dephospho-CoA kinase -
  HF888_RS13020 (HF888_13020) yacG 2795594..2795794 (+) 201 WP_007016585.1 DNA gyrase inhibitor YacG -
  HF888_RS13025 (HF888_13025) mutT 2795817..2796233 (-) 417 WP_007016586.1 8-oxo-dGTP diphosphatase MutT -
  HF888_RS13030 (HF888_13030) argJ 2796246..2797463 (-) 1218 WP_007016587.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44048.81 Da        Isoelectric Point: 9.1445

>NTDB_id=436703 HF888_RS13005 WP_007016582.1 2792851..2794077(+) (pilC) [Bermanella marisrubri strain RED65]
MAKTKTVTFQWEGLNKRGQKVDGEMLGDNPALVKAQLRKQGINPKKVRRKQEGLFGIGGGQGKGKVKPADVTLFMRQLAT
MAKSGVPLMQGLEIVADGLENPAMQKVVLSVKDEVSAGNDFASCLKKHPQHFDSLTCALIESGEQSGALEQMLDRVALYK
EKSEALKQKVSKALKYPIVTLIIAAIVTVILLVKVVPTFESMFSSLGGDLPAPTQMVVNISEWMQANYLILLGAIITFVF
GTKEAIKRSPKLQEQKDRLILKMPVIGEILKKSAVARFGRVLSTTFAAGVPLVDALESVAEASGNVVYRDAILRIRDDVS
TGTQMNASIRATGVFPNMVAQMVAIGEESGALDAMLEKVASYYEEEVDNLVDGLTAMIEPIVMAFLGVVVGGLLIAMYLP
IFSMGNAM

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=436703 HF888_RS13005 WP_007016582.1 2792851..2794077(+) (pilC) [Bermanella marisrubri strain RED65]
ATGGCAAAAACAAAAACCGTGACGTTTCAGTGGGAAGGCCTGAACAAACGAGGCCAGAAAGTTGATGGGGAAATGCTCGG
CGACAATCCTGCGCTCGTAAAAGCCCAATTACGAAAACAAGGTATTAACCCCAAAAAAGTACGTCGCAAACAAGAAGGTT
TGTTTGGTATTGGCGGTGGCCAAGGTAAAGGCAAAGTAAAACCCGCAGATGTCACATTATTTATGCGTCAATTAGCCACA
ATGGCAAAGTCTGGTGTGCCGCTTATGCAAGGCTTAGAAATCGTGGCCGATGGTTTAGAAAACCCCGCAATGCAAAAAGT
CGTACTCAGTGTTAAAGATGAGGTGTCGGCTGGTAATGACTTCGCCTCTTGCTTAAAAAAACACCCACAACACTTTGACT
CCCTTACATGCGCATTAATTGAATCCGGAGAGCAGTCAGGTGCACTAGAGCAGATGCTTGATAGAGTGGCTTTATACAAA
GAAAAATCAGAGGCTCTCAAACAAAAAGTATCTAAAGCACTAAAATATCCAATTGTCACACTGATTATCGCAGCGATCGT
AACCGTAATCCTGCTTGTAAAGGTTGTTCCGACATTTGAAAGCATGTTTTCTAGTCTAGGGGGAGACTTACCTGCGCCCA
CTCAAATGGTCGTCAATATATCCGAATGGATGCAAGCCAATTACTTGATTTTGCTCGGTGCAATTATTACCTTTGTATTT
GGAACAAAAGAAGCGATCAAGCGCAGCCCCAAACTTCAAGAGCAAAAAGACAGACTCATACTTAAAATGCCGGTTATTGG
CGAAATCTTAAAGAAAAGTGCCGTTGCCCGTTTTGGGCGAGTATTATCCACCACATTCGCTGCGGGGGTCCCACTTGTTG
ATGCACTCGAGAGCGTCGCCGAAGCATCTGGTAACGTAGTCTATCGAGATGCAATATTGCGGATACGTGATGACGTATCA
ACGGGCACGCAAATGAATGCGTCTATTCGCGCGACAGGGGTGTTCCCAAATATGGTAGCGCAGATGGTAGCGATTGGTGA
AGAATCCGGTGCACTAGATGCCATGTTAGAGAAAGTAGCAAGCTACTATGAAGAGGAAGTGGACAATCTAGTAGATGGCT
TAACAGCTATGATAGAACCTATCGTAATGGCCTTCTTAGGGGTGGTTGTTGGTGGCCTATTGATTGCCATGTACCTACCA
ATCTTTTCTATGGGCAATGCGATGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(280-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1MZP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.204

98.529

0.583
  pilC Acinetobacter baumannii D1279779

58.313

98.775

0.576
  pilC Acinetobacter baylyi ADP1

58.291

97.549

0.569
  pilC Legionella pneumophila strain ERS1305867

50.249

98.529

0.495
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

41.562

97.304

0.404
  pilG Neisseria gonorrhoeae MS11

41.103

97.794

0.402
  pilG Neisseria meningitidis 44/76-A

40.852

97.794

0.4