Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP98_RS01465 Genome accession   NZ_CP063112
Coordinates   302070..303599 (+) Length   509 a.a.
NCBI ID   WP_197570154.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 297070..308599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS01440 (INP98_01440) oppC 297392..298327 (+) 936 WP_197570151.1 oligopeptide ABC transporter permease OppC -
  INP98_RS01445 (INP98_01445) - 298337..299308 (+) 972 WP_070868468.1 ABC transporter ATP-binding protein -
  INP98_RS01450 (INP98_01450) oppF 299305..300303 (+) 999 WP_197570152.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP98_RS01455 (INP98_01455) - 300343..301212 (-) 870 WP_197570153.1 VirK/YbjX family protein -
  INP98_RS01460 (INP98_01460) yihA 301326..301940 (+) 615 WP_032822378.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP98_RS01465 (INP98_01465) comM 302070..303599 (+) 1530 WP_197570154.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP98_RS01470 (INP98_01470) nfuA 303643..304227 (-) 585 WP_197545166.1 Fe-S biogenesis protein NfuA -
  INP98_RS01475 (INP98_01475) - 304342..305031 (-) 690 WP_197570155.1 ComF family protein -
  INP98_RS01480 (INP98_01480) comE 305051..306433 (-) 1383 WP_049369641.1 type IV pilus secretin PilQ Machinery gene
  INP98_RS01485 (INP98_01485) - 306435..306818 (-) 384 WP_049369639.1 pilus assembly protein PilP -
  INP98_RS01490 (INP98_01490) comC 306818..307360 (-) 543 WP_049369637.1 hypothetical protein Machinery gene
  INP98_RS01495 (INP98_01495) comB 307357..307869 (-) 513 WP_197570156.1 PilN domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55733.14 Da        Isoelectric Point: 9.7524

>NTDB_id=436426 INP98_RS01465 WP_197570154.1 302070..303599(+) (comM) [Haemophilus parainfluenzae strain M1C149_1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRVTVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQRAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=436426 INP98_RS01465 WP_197570154.1 302070..303599(+) (comM) [Haemophilus parainfluenzae strain M1C149_1]
ATGTCTCTTGCTATTGTTTACAGCCGTGCATCAATGGGTGTACAAGCCCCTCTTGTTACGATTGAAGTACATTTAAGTAA
CGGGAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACCGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCGTTAA
TGAATGCCCAGTTCAAATATCCTGCTAAACGCGTCACCGTCAACCTTGCGCCAGCTGATTTACCCAAAGAAGGAGGGAGA
TTTGATTTACCTATTGCAATCGGTATTTTAGCTGCATCGGATCAACTCGACGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGCGAACTCGCATTAACAGGTGAATTACGTGGTGTACATGGCGTGATCCCCGCCATTTTAGCGGCACAAAGAGCGAAAC
GAGCCCCCATTATCGCTTATCAAAATGCTAATGAGGCGTCACTTGTCTCAGAGCAAGAGACTTATTTTGCTAAAAACCTT
TTGGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCTTCATTACTTGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACGGATATTATTGGTCAGCAACATGCTAAACGAGCCCTAACAATTGCGGCTGCAG
GTCAGCATAATCTGCTCTTTTTAGGACCTCCTGGTACAGGTAAAACCATGTTGGCAAGTCGTCTCACTGCATTACTCCCA
GAAATGACTGATTTAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCATTCCGAGCACCACATCATAGTGCCTCATTACCTGCCTTAGTGGGGGGAGGAACCATTCCCAAACCAGGCG
AAATATCGCTCGCACATAACGGCGTACTTTTTCTTGATGAACTACCTGAGTTTGAGCGAAAAGTACTGGATGCACTTCGT
CAGCCCTTAGAAAGTGGAGAAATTATTATTTCGCGTGCCAATGCGAAAATCCAATTCCCCGCTCGCTTTCAACTCGTTGC
CGCGATGAATCCAAGTCCAACCGGACATTATACAGGAACACATAATCGCACCTCGCCGCAGCAAGTGATGCGTTATTTAA
ATCGCCTTTCGGGGCCATTTTTAGATCGCTTTGATTTATCCATTGAAGTCCCCCTTCTGCCGCAAGGTAGCCTACAGAAT
ACGGGTGATAGAGGGGAAACAAGCCAACAAGTACGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCTCGAGCCGG
TAAAATCAATGCTTATCTTTCAAGCAAAGAAATTGAACGAGATTGTAAATTACAAGATAAAGATGCATTATTTCTGGAGA
ATGCTTTAAATAAACTCGGGCTTTCTGTTAGAGCCTACCATCGGATTTTAAAAGTCTCACGCACAATTGCCGATTTAAAT
GGCGAAAAAGAAATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCGATGGATCGGTTGTTACAGAAATTATC
TGCTGCTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.11

99.607

0.917
  comM Glaesserella parasuis strain SC1401

79.487

99.607

0.792
  comM Vibrio cholerae O1 biovar El Tor strain E7946

66.929

99.804

0.668
  comM Vibrio cholerae strain A1552

66.929

99.804

0.668
  comM Vibrio campbellii strain DS40M4

65.619

100

0.656
  comM Legionella pneumophila str. Paris

51.786

99.018

0.513
  comM Legionella pneumophila strain ERS1305867

51.786

99.018

0.513
  comM Acinetobacter baylyi ADP1

49.102

98.428

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.184

100

0.477