Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   INP98_RS01490 Genome accession   NZ_CP063112
Coordinates   306818..307360 (-) Length   180 a.a.
NCBI ID   WP_049369637.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301818..312360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS01465 (INP98_01465) comM 302070..303599 (+) 1530 WP_197570154.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP98_RS01470 (INP98_01470) nfuA 303643..304227 (-) 585 WP_197545166.1 Fe-S biogenesis protein NfuA -
  INP98_RS01475 (INP98_01475) - 304342..305031 (-) 690 WP_197570155.1 ComF family protein -
  INP98_RS01480 (INP98_01480) comE 305051..306433 (-) 1383 WP_049369641.1 type IV pilus secretin PilQ Machinery gene
  INP98_RS01485 (INP98_01485) - 306435..306818 (-) 384 WP_049369639.1 pilus assembly protein PilP -
  INP98_RS01490 (INP98_01490) comC 306818..307360 (-) 543 WP_049369637.1 hypothetical protein Machinery gene
  INP98_RS01495 (INP98_01495) comB 307357..307869 (-) 513 WP_197570156.1 PilN domain-containing protein Machinery gene
  INP98_RS01500 (INP98_01500) comA 307856..308704 (-) 849 WP_049369634.1 pilus assembly protein PilM Machinery gene
  INP98_RS01505 (INP98_01505) - 308804..310654 (+) 1851 Protein_283 penicillin-binding protein 1A -
  INP98_RS09770 - 310730..311422 (+) 693 Protein_284 penicillin-binding protein 1A -
  INP98_RS01510 (INP98_01510) - 311486..312331 (+) 846 WP_197544088.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21189.26 Da        Isoelectric Point: 6.0969

>NTDB_id=436429 INP98_RS01490 WP_049369637.1 306818..307360(-) (comC) [Haemophilus parainfluenzae strain M1C149_1]
MRNLINELIQRSAQSWFGRWLRLPQMAHAAFWLCALSAVIFLPVFRYVENSNEQYRLDAELSLQQQEWDKQERILQTLRQ
KSDSRQLSPELANSVLPINQHIQALLNGRLRTLDLRWDFSQHTLLHLSLQGYFVDLQQFLTALLNDVPKLSLTQLNIEKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=436429 INP98_RS01490 WP_049369637.1 306818..307360(-) (comC) [Haemophilus parainfluenzae strain M1C149_1]
ATGAGGAACCTTATCAATGAGCTTATTCAAAGAAGTGCACAAAGTTGGTTTGGGCGATGGCTTCGATTACCTCAAATGGC
CCATGCTGCCTTTTGGTTGTGTGCATTAAGTGCGGTTATTTTCTTACCTGTTTTTCGTTATGTTGAAAACAGTAATGAAC
AGTATCGGCTTGACGCAGAATTGAGTTTACAACAACAAGAGTGGGATAAACAGGAAAGGATTTTACAAACTTTAAGACAA
AAGTCAGACAGCCGACAACTTTCTCCAGAATTGGCTAATTCTGTGTTGCCGATCAATCAGCATATTCAGGCGTTGTTAAA
TGGGCGACTTCGCACGTTAGATTTGCGTTGGGATTTTTCTCAACATACGTTGTTGCACTTATCATTACAAGGCTATTTTG
TCGATTTACAACAATTTTTGACCGCACTTTTAAACGATGTTCCTAAACTTTCCTTAACGCAATTAAACATTGAAAAATTA
GATGAAGAGGAAAATGCTTCTATTACATGTGAGTTAATTTTCCAATTAAATAAGGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

41.104

90.556

0.372
  comC Haemophilus influenzae Rd KW20

40.491

90.556

0.367