Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   AHBrac6_RS19755 Genome accession   NZ_CP050850
Coordinates   4325892..4327598 (+) Length   568 a.a.
NCBI ID   WP_029302067.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain Brac6     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4320892..4332598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHBrac6_RS19730 (AHBrac6_19765) pdhR 4322053..4322817 (-) 765 WP_011707564.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  AHBrac6_RS19735 (AHBrac6_19770) ampD 4323093..4323665 (-) 573 WP_206818889.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AHBrac6_RS19740 (AHBrac6_19775) - 4323813..4324283 (+) 471 WP_206818890.1 retropepsin-like aspartic protease -
  AHBrac6_RS19745 (AHBrac6_19780) nadC 4324289..4325146 (+) 858 WP_206818891.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AHBrac6_RS19750 (AHBrac6_19785) tapA 4325469..4325885 (+) 417 WP_042066959.1 type IVa pilus major pilin TapA -
  AHBrac6_RS19755 (AHBrac6_19790) pilB 4325892..4327598 (+) 1707 WP_029302067.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  AHBrac6_RS19760 (AHBrac6_19795) pilC 4327714..4328955 (+) 1242 WP_206818892.1 type II secretion system F family protein Machinery gene
  AHBrac6_RS19765 (AHBrac6_19800) pilD 4328978..4329850 (+) 873 WP_206818893.1 A24 family peptidase Machinery gene
  AHBrac6_RS19770 (AHBrac6_19805) coaE 4329869..4330483 (+) 615 WP_206818894.1 dephospho-CoA kinase -
  AHBrac6_RS19775 (AHBrac6_19810) zapD 4330521..4331243 (+) 723 WP_206818895.1 cell division protein ZapD -
  AHBrac6_RS19780 (AHBrac6_19815) yacG 4331253..4331447 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  AHBrac6_RS19785 (AHBrac6_19820) mutT 4331508..4331921 (-) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 62511.90 Da        Isoelectric Point: 5.4342

>NTDB_id=435249 AHBrac6_RS19755 WP_029302067.1 4325892..4327598(+) (pilB) [Aeromonas hydrophila strain Brac6]
MTSSPNSGLALSLAASSLLSESDSQRYLSQAKAQRKPFVTFLIENEILDSKALADFCELEYGVPLLDLAAFDLAEIPQKY
LNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTEALLVEENKLTTAIGKLMESDQDALGMEDIDESEI
SELEVSDEGSRLDESVNTADDDAPIVKYINKIMMDAIKRGASDLHFEPYETKYRIRFRIDGILHEIATPPVNLANRFSAR
LKVMARLDIAERRLPQDGRIKLKLSRNKSMDMRVNTLPTMWGEKIVIRLLDSSAARLNIEQLGFDDRQKAQYLRALSKPQ
GMILVTGPTGSGKTVSLYTGLNILNTTEVNISTAEDPVEINLPGVNQVQVNPKAGLTFASALRSFLRQDPDVVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKAPEVVPEAELLELGFT
QQQLAAGLRLFKPVGCKECSGGYKGRVGIYEIMLMSENIAKLIMQGANSLQIAAIAQKEGMRTLRTSGLEKARLGVTSLA
EINRVTTN

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=435249 AHBrac6_RS19755 WP_029302067.1 4325892..4327598(+) (pilB) [Aeromonas hydrophila strain Brac6]
ATGACCTCTAGCCCCAATAGCGGCCTGGCGTTAAGCCTGGCCGCCTCTTCCCTGCTCAGTGAGTCCGACTCACAACGCTA
TCTGAGCCAAGCCAAGGCACAGCGCAAACCTTTTGTGACCTTTCTGATCGAAAACGAAATCCTCGACAGCAAAGCATTGG
CGGACTTCTGCGAGCTGGAGTATGGGGTACCTCTGCTGGATCTTGCCGCCTTCGACCTGGCCGAGATCCCGCAGAAATAC
CTCAATCAGAAGCTGATTGAAAAACATCACGTCCTGCCCATCTATACCCAAGGCCACACCCTCTATATCGCCATGTCAGA
CCCGACCAATGTGTCTGCACTGGAGGATTTTGGCTTCAGCTTCGGGTTGCATACCGAGGCGCTGCTGGTCGAGGAGAACA
AACTCACCACAGCCATCGGCAAGCTGATGGAGAGCGATCAGGATGCCCTCGGCATGGAGGACATCGATGAATCCGAGATT
TCCGAGCTGGAAGTGTCAGATGAGGGATCGCGACTCGACGAAAGTGTCAACACGGCCGACGACGACGCGCCCATCGTCAA
ATACATCAACAAAATCATGATGGATGCCATCAAGCGCGGTGCCTCTGACCTTCACTTCGAGCCCTATGAGACCAAATACC
GCATCCGCTTTCGAATAGACGGTATTCTGCATGAGATAGCGACCCCACCGGTCAACCTAGCCAACCGCTTCTCGGCTCGT
CTCAAGGTGATGGCACGGCTCGATATCGCTGAGCGGCGACTGCCACAGGATGGCCGCATCAAGCTCAAGCTGTCGCGCAA
CAAGTCGATGGATATGCGGGTCAATACCCTGCCCACCATGTGGGGCGAAAAGATCGTTATCCGTTTGCTCGACTCCTCCG
CGGCACGCCTCAATATCGAGCAGCTCGGTTTTGACGATCGCCAGAAGGCGCAATACCTGCGTGCCCTGTCGAAGCCTCAG
GGCATGATTCTGGTGACCGGCCCTACCGGTTCGGGCAAGACGGTTTCACTCTATACCGGTCTCAATATTCTCAATACCAC
CGAGGTCAATATCTCCACCGCCGAAGATCCGGTGGAGATCAACCTGCCCGGCGTCAATCAGGTGCAAGTCAATCCCAAAG
CAGGACTGACCTTCGCCAGCGCCCTGCGCTCTTTCTTGCGCCAAGACCCGGATGTGGTCATGGTGGGTGAAATCCGGGAT
CTGGAGACCGCTGAAATTGCCATCAAGGCCGCCCAGACCGGCCACTTGGTGCTATCCACCCTGCACACCAACTCGGCGGC
AGAAACGCTGACCCGGATGATGAACATGGGGGTGCCCGCCTTCAATATCGCCTCCTCGGTCACCCTGATCATGGCTCAGC
GGCTGGCGCGTAAACTGTGCGATCACTGCAAAGCCCCCGAAGTGGTACCCGAGGCTGAGCTGCTTGAGCTGGGTTTTACC
CAGCAGCAGCTGGCCGCTGGCTTGCGGCTGTTCAAACCGGTTGGCTGCAAAGAGTGCTCGGGTGGCTACAAGGGCCGGGT
CGGCATCTACGAAATCATGCTAATGTCTGAAAACATCGCAAAATTGATCATGCAGGGGGCCAACTCTCTGCAGATTGCCG
CCATAGCCCAGAAGGAAGGCATGCGTACCTTGCGTACCTCCGGCCTTGAGAAGGCCCGCCTGGGGGTGACCAGTCTGGCG
GAGATAAACCGGGTAACAACCAACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(42-146)

Type II/IV secretion system protein (T2SSE)

(191-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.712

100

0.558
  pilB Acinetobacter baylyi ADP1

55.439

100

0.556
  pilB Legionella pneumophila strain ERS1305867

54.336

99.472

0.54
  pilB Vibrio cholerae strain A1552

54.159

99.472

0.539
  pilB Vibrio campbellii strain DS40M4

51.943

99.648

0.518
  pilB Vibrio parahaemolyticus RIMD 2210633

51.423

98.944

0.509
  pilF Neisseria gonorrhoeae MS11

46.454

99.296

0.461
  pilB/pilB1 Synechocystis sp. PCC 6803

38.879

97.359

0.379
  pilF Thermus thermophilus HB27

40.152

92.958

0.373