Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HCN55_RS21960 Genome accession   NZ_CP050532
Coordinates   4195746..4196264 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis str. SMY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4190746..4201264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN55_RS21930 (HCN55_21945) yyaJ 4191249..4192604 (+) 1356 WP_003243011.1 MFS transporter -
  HCN55_RS21935 (HCN55_21950) maa 4192638..4193192 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  HCN55_RS21940 (HCN55_21955) yyaH 4193210..4193590 (-) 381 WP_003244460.1 VOC family protein -
  HCN55_RS21945 (HCN55_21960) ccpB 4193646..4194581 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  HCN55_RS21950 (HCN55_21965) xth 4194640..4195398 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  HCN55_RS21955 (HCN55_21970) rpsR 4195463..4195702 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  HCN55_RS21960 (HCN55_21975) ssbA 4195746..4196264 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  HCN55_RS21965 (HCN55_21980) rpsF 4196305..4196592 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  HCN55_RS21970 (HCN55_21985) ychF 4196703..4197803 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  HCN55_RS21975 (HCN55_21990) yyaE 4197930..4199933 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  HCN55_RS21980 (HCN55_21995) yyzM 4199984..4200190 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=433784 HCN55_RS21960 WP_003219228.1 4195746..4196264(-) (ssbA) [Bacillus subtilis subsp. subtilis str. SMY]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=433784 HCN55_RS21960 WP_003219228.1 4195746..4196264(-) (ssbA) [Bacillus subtilis subsp. subtilis str. SMY]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378