Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HB762_RS16110 Genome accession   NZ_CP050470
Coordinates   3379575..3380798 (-) Length   407 a.a.
NCBI ID   WP_255899279.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3374575..3385798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS16070 (HB762_15985) rpsP 3374665..3374913 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  HB762_RS16075 (HB762_15990) rimM 3374941..3375489 (+) 549 WP_005534055.1 ribosome maturation factor RimM -
  HB762_RS16080 (HB762_15995) trmD 3375517..3376260 (+) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HB762_RS16085 (HB762_16000) rplS 3376302..3376655 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  HB762_RS16090 (HB762_16005) yacG 3376993..3377193 (-) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  HB762_RS16095 (HB762_16010) zapD 3377250..3377990 (-) 741 WP_255899271.1 cell division protein ZapD -
  HB762_RS16100 (HB762_16015) coaE 3378018..3378632 (-) 615 WP_255899274.1 dephospho-CoA kinase -
  HB762_RS16105 (HB762_16020) pilD 3378633..3379502 (-) 870 WP_255899277.1 A24 family peptidase Machinery gene
  HB762_RS16110 (HB762_16025) pilC 3379575..3380798 (-) 1224 WP_255899279.1 type II secretion system F family protein Machinery gene
  HB762_RS16115 (HB762_16030) pilB 3380833..3382518 (-) 1686 WP_255899281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HB762_RS16120 (HB762_16035) pilA 3382524..3382982 (-) 459 WP_017189133.1 pilin Machinery gene
  HB762_RS16125 (HB762_16040) nadC 3383248..3384135 (-) 888 WP_010643264.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HB762_RS16130 (HB762_16045) ampD 3384228..3384779 (+) 552 WP_012128874.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44979.26 Da        Isoelectric Point: 10.4489

>NTDB_id=433125 HB762_RS16110 WP_255899279.1 3379575..3380798(-) (pilC) [Vibrio campbellii strain LJC013]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMNVTRAVEAGTPMSKAMRTASTHFDPLYTNLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRSCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=433125 HB762_RS16110 WP_255899279.1 3379575..3380798(-) (pilC) [Vibrio campbellii strain LJC013]
ATGAAAACCATCGCTCCACAACTTAAAAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCAATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAATGTCACAAGAGCGGTAGAAGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAAACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCCTTTATTGGACTGAGTTTTGTGAGCCTGCTCATTTCCGGC
AAAATTATGTCGCAACGATCCGATTCATTTCGCCTTTTAGCCGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAATATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAGCTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAGGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGCGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.263

100

0.993
  pilC Vibrio cholerae strain A1552

73.5

98.28

0.722
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.297

0.4
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Legionella pneumophila strain ERS1305867

39.604

99.263

0.393
  pilG Neisseria gonorrhoeae MS11

39.312

100

0.393
  pilG Neisseria meningitidis 44/76-A

38.48

100

0.386