Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   HBA50_RS02605 Genome accession   NZ_CP050133
Coordinates   508832..510808 (+) Length   658 a.a.
NCBI ID   WP_045500887.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 503832..515808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS02585 (HBA50_02585) - 504298..505449 (+) 1152 WP_045500881.1 MFS transporter -
  HBA50_RS02590 (HBA50_02590) - 505458..506186 (+) 729 WP_045500883.1 pseudouridine synthase -
  HBA50_RS02595 (HBA50_02595) - 506301..506795 (+) 495 WP_005591876.1 DUF536 domain-containing protein -
  HBA50_RS02600 (HBA50_02600) - 506937..508691 (+) 1755 WP_045500885.1 glycerophosphodiester phosphodiesterase -
  HBA50_RS02605 (HBA50_02605) amiA3 508832..510808 (+) 1977 WP_045500887.1 peptide ABC transporter substrate-binding protein Regulator
  HBA50_RS02610 (HBA50_02610) amiC 510874..512370 (+) 1497 WP_045500889.1 ABC transporter permease Regulator
  HBA50_RS02615 (HBA50_02615) amiD 512370..513296 (+) 927 WP_045500891.1 oligopeptide ABC transporter permease OppC Regulator
  HBA50_RS02620 (HBA50_02620) amiE 513305..514372 (+) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  HBA50_RS02625 (HBA50_02625) amiF 514383..515309 (+) 927 WP_045500894.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72473.61 Da        Isoelectric Point: 4.9024

>NTDB_id=430199 HBA50_RS02605 WP_045500887.1 508832..510808(+) (amiA3) [Streptococcus cristatus ATCC 51100]
MKKSKVLALAGVSLLSVGVLAACSGSSKGNSASKAYNYVYVADPETLDYVTSGKASTVDLVTNGVDGLLENDQYGNFVPS
IAESWTVSKDGLTYTYKIRKDAKWYTSEGEEYGDVTAQDFVTGLKHAADKKSEALYLVQQSVKGLDDYVTGKTTDFSTVG
VKAVDDHTLQYTLNQPEPQWNSKTTSQVLWPVNADFLKKQGDKFGQSTDPSSILYNGPFLMKSITAKSAVEYQKNENYWD
KKNVHVDTIKLSYFDGQDQDALARNFKDGAYTVARLYPTSSNYAGVEKDFKDNIYFTAPAATVNVMSINLDRQAYNHTSK
TTDAQKSATKKAILNKDFRQALNFAIDRKSYSAQVNGEEGAPYAVRNTFVPPTFVQAGDKSFGDLVEEKVATLGDEWKGV
KLEDGQDGLYNAEKAKAEFAKAKAALQAEGVEFPIHLDLPVSQTSKPLINRAQSLKQSVEKALGSENVVVDIQQMSEDDL
FNITYYAPNAAAEDWDISILVSWGPDYQDPSTYTDILKTSAAETTKTYLGFEGADNAAAKQVGLDEYDRLVDEAGKETSD
VATRYEKYAAAQAWLTDNSIIVPLMANQGAAPFISRVEPFSGAYAQTGNKTSSTYFKRIKVKDEVVTKKDYEAARKKWLK
EKEESNAKAQKDLESHVE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=430199 HBA50_RS02605 WP_045500887.1 508832..510808(+) (amiA3) [Streptococcus cristatus ATCC 51100]
ATGAAAAAAAGCAAAGTATTAGCTTTAGCTGGGGTTAGCCTTCTTTCAGTAGGCGTTTTAGCTGCTTGTTCTGGTTCATC
AAAAGGAAACAGCGCATCTAAAGCTTATAATTATGTCTATGTTGCTGATCCAGAAACATTGGACTATGTGACATCTGGTA
AAGCTTCAACAGTTGACCTCGTGACAAACGGTGTGGACGGTTTGTTGGAAAATGACCAATATGGTAATTTTGTACCGTCT
ATTGCAGAGTCTTGGACTGTTTCTAAAGATGGTTTGACTTATACTTATAAAATCCGTAAAGATGCTAAATGGTACACTTC
AGAAGGTGAAGAATACGGCGATGTGACAGCTCAGGACTTTGTGACTGGTCTCAAGCATGCTGCCGACAAGAAATCTGAAG
CCCTATACCTTGTTCAACAATCTGTAAAAGGCTTGGATGACTATGTGACTGGTAAGACAACTGACTTCTCTACTGTCGGT
GTCAAAGCAGTTGATGACCACACTCTCCAATATACTCTGAACCAACCTGAACCACAGTGGAATTCAAAAACAACTTCACA
AGTTCTTTGGCCAGTTAACGCAGATTTCCTTAAGAAACAAGGGGACAAATTCGGTCAATCTACTGACCCATCTTCTATCC
TTTACAATGGACCATTCTTGATGAAGTCTATCACTGCTAAGTCTGCTGTTGAGTATCAAAAAAATGAAAACTACTGGGAT
AAGAAAAATGTTCATGTCGATACTATCAAGTTGTCTTACTTTGATGGACAAGACCAAGATGCCCTTGCTCGTAACTTTAA
AGACGGCGCCTACACAGTAGCTCGTCTCTACCCTACCAGCTCAAACTATGCTGGAGTAGAAAAAGACTTTAAGGACAACA
TCTACTTTACTGCACCAGCTGCTACTGTAAATGTGATGAGTATCAACCTTGACCGCCAAGCTTACAACCACACAAGTAAA
ACAACAGATGCTCAGAAGTCTGCTACTAAGAAAGCAATTCTAAACAAAGACTTCCGTCAAGCCTTGAACTTTGCTATCGA
CCGTAAGTCTTATTCAGCACAAGTTAATGGTGAAGAAGGTGCTCCTTACGCTGTTCGCAATACTTTTGTACCGCCAACCT
TTGTTCAAGCCGGTGATAAGTCTTTTGGCGATCTAGTCGAAGAAAAAGTGGCTACATTGGGCGACGAATGGAAAGGTGTT
AAACTTGAGGATGGTCAAGACGGACTCTATAATGCTGAGAAGGCAAAAGCAGAGTTTGCAAAAGCAAAAGCTGCCTTGCA
AGCAGAGGGAGTTGAATTCCCAATCCATCTAGATCTTCCAGTTTCTCAAACATCGAAACCATTGATCAACCGTGCTCAAT
CCCTTAAGCAATCTGTTGAAAAGGCTTTGGGATCTGAAAATGTGGTGGTAGATATCCAACAAATGTCAGAAGATGACCTC
TTCAATATTACTTACTACGCACCAAATGCTGCCGCTGAAGATTGGGATATTTCAATCCTCGTTAGCTGGGGTCCTGACTA
TCAAGATCCATCAACATACACAGACATTCTGAAAACTTCAGCAGCTGAAACAACAAAAACCTACCTTGGCTTTGAAGGAG
CAGATAATGCTGCAGCTAAGCAAGTTGGTTTAGATGAATATGACCGCTTGGTAGATGAAGCTGGTAAAGAGACTTCAGAT
GTTGCTACTCGTTACGAAAAATATGCAGCAGCTCAGGCTTGGTTGACAGATAACTCTATTATTGTTCCATTGATGGCAAA
CCAAGGAGCAGCACCATTTATCTCACGTGTCGAGCCGTTCTCAGGCGCTTATGCCCAAACTGGTAATAAGACAAGTTCTA
CTTACTTCAAACGTATTAAAGTGAAAGATGAAGTAGTAACGAAGAAAGACTACGAAGCAGCTCGTAAGAAATGGCTGAAA
GAAAAAGAAGAGTCAAATGCGAAAGCACAAAAAGATCTCGAAAGTCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

66.768

100

0.669
  amiA3 Streptococcus thermophilus LMD-9

66.464

100

0.666
  amiA Streptococcus salivarius strain HSISS4

65.502

100

0.655