Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   HBA50_RS02625 Genome accession   NZ_CP050133
Coordinates   514383..515309 (+) Length   308 a.a.
NCBI ID   WP_045500894.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 509383..520309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS02610 (HBA50_02610) amiC 510874..512370 (+) 1497 WP_045500889.1 ABC transporter permease Regulator
  HBA50_RS02615 (HBA50_02615) amiD 512370..513296 (+) 927 WP_045500891.1 oligopeptide ABC transporter permease OppC Regulator
  HBA50_RS02620 (HBA50_02620) amiE 513305..514372 (+) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  HBA50_RS02625 (HBA50_02625) amiF 514383..515309 (+) 927 WP_045500894.1 ATP-binding cassette domain-containing protein Regulator
  HBA50_RS02630 (HBA50_02630) - 515568..517760 (+) 2193 WP_045500896.1 PTS transporter subunit IIBC -
  HBA50_RS02635 (HBA50_02635) - 517778..518593 (+) 816 WP_045500898.1 endonuclease/exonuclease/phosphatase family protein -
  HBA50_RS02640 (HBA50_02640) liaF 518815..519510 (+) 696 WP_045500900.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.85 Da        Isoelectric Point: 5.4887

>NTDB_id=430203 HBA50_RS02625 WP_045500894.1 514383..515309(+) (amiF) [Streptococcus cristatus ATCC 51100]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGEILYEGKKINGKQSKA
EEAELIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEDRQQKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDPEQHDYSVDQPSMVEIRPGHYVWANDAEADRYKKEYK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=430203 HBA50_RS02625 WP_045500894.1 514383..515309(+) (amiF) [Streptococcus cristatus ATCC 51100]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGCGAAGGAAGTAAGAAATTTGTTGCTGTAAAAAA
TGCGAATTTCTTTATCAATAAAGGAGAAACTTTTTCCCTAGTAGGTGAATCTGGTTCTGGTAAGACAACCATCGGCCGTG
CTATCATCGGCTTGAACGATACTAGTGCAGGTGAGATTTTATACGAAGGTAAAAAGATCAACGGGAAGCAATCTAAAGCT
GAGGAAGCTGAATTGATCCGTAAGATTCAGATGATTTTCCAAGATCCAGCTGCTAGCTTGAATGAGCGTGCTACGGTTGA
CTATATCATTTCAGAAGGTCTTTATAACTATCATCTTTTTGAAAATGAAGAAGACCGTCAGCAAAAGGTTAAGAATATCA
TTCGTGAAGTTGGTCTTTTAGCTGAGCATTTGACACGCTATCCCCACGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCTCGTGCCTTAGTCATGGAGCCAGATTTCGTTATTGCGGACGAGCCAATCTCTGCCTTGGACGTTTCCGTCCGTGC
GCAAGTCTTGAATCTTTTGAAAAAATTCCAAAAAGAACTTGGCTTGACCTATCTCTTTATCGCCCATGACCTATCGGTAG
TTCGTTTTATTTCAGATCGAATCGCTGTTATCTATAAAGGGGTTATCGTCGAGGTTGCAGAGACGGAAGAGTTGTTTAAC
AACCCTATCCACCCTTATACGCAATCCCTTTTGTCTGCTGTGCCAATTCCAGACCCAATTTTGGAGCGTAAAAAGGTCTT
AAAGGTTTACGATCCAGAGCAGCATGACTACTCAGTGGATCAACCTAGCATGGTTGAGATCCGTCCTGGTCACTATGTCT
GGGCTAATGACGCAGAAGCTGACCGCTATAAAAAAGAATATAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.294

99.351

0.847
  amiF Streptococcus thermophilus LMG 18311

84.641

99.351

0.841
  amiF Streptococcus thermophilus LMD-9

84.314

99.351

0.838