Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   HBA50_RS02615 Genome accession   NZ_CP050133
Coordinates   512370..513296 (+) Length   308 a.a.
NCBI ID   WP_045500891.1    Uniprot ID   A0A0F2CJQ6
Organism   Streptococcus cristatus ATCC 51100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 507370..518296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS02605 (HBA50_02605) amiA3 508832..510808 (+) 1977 WP_045500887.1 peptide ABC transporter substrate-binding protein Regulator
  HBA50_RS02610 (HBA50_02610) amiC 510874..512370 (+) 1497 WP_045500889.1 ABC transporter permease Regulator
  HBA50_RS02615 (HBA50_02615) amiD 512370..513296 (+) 927 WP_045500891.1 oligopeptide ABC transporter permease OppC Regulator
  HBA50_RS02620 (HBA50_02620) amiE 513305..514372 (+) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  HBA50_RS02625 (HBA50_02625) amiF 514383..515309 (+) 927 WP_045500894.1 ATP-binding cassette domain-containing protein Regulator
  HBA50_RS02630 (HBA50_02630) - 515568..517760 (+) 2193 WP_045500896.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34729.75 Da        Isoelectric Point: 9.7486

>NTDB_id=430201 HBA50_RS02615 WP_045500891.1 512370..513296(+) (amiD) [Streptococcus cristatus ATCC 51100]
MATIDKSKFQFVKRDDFASETIDAPAYSYWRSVMRQFLKKKSTTIMLGILVAIVLMSFIYPMFSNFDFNDVSKVNDFSMR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISIIATLINLIIGIIIGAIWGISKAVDRVMMEVYNVISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTYKIVTKNIMPQLVSVIVTTTSQMLPNFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=430201 HBA50_RS02615 WP_045500891.1 512370..513296(+) (amiD) [Streptococcus cristatus ATCC 51100]
ATGGCTACAATTGATAAAAGTAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCTTA
TTCATACTGGCGCTCCGTTATGCGTCAGTTCTTGAAAAAGAAATCAACGACGATCATGTTAGGAATTCTGGTTGCCATCG
TTTTGATGAGTTTCATTTATCCAATGTTCTCGAATTTCGATTTCAATGATGTCAGCAAGGTAAATGACTTTAGTATGCGT
TATATCAAACCAAATGCTGAACACTGGTTTGGAACAGACAGTAATGGTAAATCTTTGTTTGACGGTGTTTGGTTTGGTGC
GCGGAATTCTATCTTGATTTCCATTATTGCAACACTCATTAACCTGATTATCGGAATTATTATTGGTGCTATCTGGGGAA
TTTCCAAAGCGGTTGACCGTGTCATGATGGAAGTCTACAATGTTATTTCAAATATTCCAGCACTCTTGATTGTCATTGTC
TTGACTTACTCTATCGGTGCTGGTTTCTGGAACTTGATCTTCGCCATGACCATCACTGGCTGGGTAGGGATTGCTTATAC
GATCCGTATTCAAATTATGCGTTATCGTGATTTGGAGTATAACTTGGCATCGCGTACCTTGGGAACTCCAACATATAAGA
TTGTGACCAAGAATATCATGCCCCAGTTGGTATCTGTTATTGTGACGACAACTTCTCAAATGCTTCCAAACTTTATCTCT
TACGAGGCATTCCTATCCTTCTTTGGGCTTGGTCTTCCTGTAACAGTACCAAGTTTGGGACGCTTGATTTCCGACTATTC
ACAAAACGTAACAACCAACGCTTACCTTTTCTGGATTCCATTGACAACCCTGATCTTGGTATCCCTGTCCTTCTTCGTAG
TTGGTCAAAACTTAGCTGATGCAAGTGATCCACGGACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CJQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.065

100

0.851
  amiD Streptococcus thermophilus LMG 18311

83.117

100

0.831
  amiD Streptococcus thermophilus LMD-9

83.117

100

0.831