Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HBA50_RS02620 Genome accession   NZ_CP050133
Coordinates   513305..514372 (+) Length   355 a.a.
NCBI ID   WP_005591881.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 508305..519372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS02605 (HBA50_02605) amiA3 508832..510808 (+) 1977 WP_045500887.1 peptide ABC transporter substrate-binding protein Regulator
  HBA50_RS02610 (HBA50_02610) amiC 510874..512370 (+) 1497 WP_045500889.1 ABC transporter permease Regulator
  HBA50_RS02615 (HBA50_02615) amiD 512370..513296 (+) 927 WP_045500891.1 oligopeptide ABC transporter permease OppC Regulator
  HBA50_RS02620 (HBA50_02620) amiE 513305..514372 (+) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  HBA50_RS02625 (HBA50_02625) amiF 514383..515309 (+) 927 WP_045500894.1 ATP-binding cassette domain-containing protein Regulator
  HBA50_RS02630 (HBA50_02630) - 515568..517760 (+) 2193 WP_045500896.1 PTS transporter subunit IIBC -
  HBA50_RS02635 (HBA50_02635) - 517778..518593 (+) 816 WP_045500898.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39385.05 Da        Isoelectric Point: 4.8051

>NTDB_id=430202 HBA50_RS02620 WP_005591881.1 513305..514372(+) (amiE) [Streptococcus cristatus ATCC 51100]
MTKNKNVILTARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGTDL
TALKSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTSKEAKEMAIDYMTKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQAEYHFTTVFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPKHPYTWSLLSSLPQLAEANGELYSIPGTPPSLYTSIKGDAFALRSDYAMAIDFEEKAPAFQVSDTHWAK
TWLLHEDAPRVEKPAIIENLHDKIRSKMGFNHLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=430202 HBA50_RS02620 WP_005591881.1 513305..514372(+) (amiE) [Streptococcus cristatus ATCC 51100]
ATGACAAAAAATAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAGAGTATTGACTGC
CATTCGAGGCGTTTCCCTTGACCTAGTTGAAGGTGAAGTTCTAGCTCTGGTTGGAGAATCTGGCTCTGGTAAATCTGTTT
TGACAAAAACATTTACTGGAATGTTGGAAGAAAATGGCCGTGTAGCTCAAGGAACGATTGATTACCGAGGAACCGATTTG
ACTGCCCTAAAGAGCAACAAGGACTGGGAACCCATTCGTGGTGCTAAAATTGCGACTATTTTCCAAGATCCGATGACTAG
TCTAGATCCGATTAATACAATCGGAAGTCAAATTACCGAAGTTATCATAAAACACCAAGGAAAAACAAGCAAAGAAGCCA
AAGAAATGGCAATCGACTACATGACTAAAGTTGGAATTCCAGACGCTGAAAAACGTTTTGAAGAGTATCCCTTCCAATAT
TCTGGTGGGATGCGCCAACGGATTGTTATCGCGATCGCCTTGGCTTGTCGTCCAGATATTCTGATCTGTGATGAGCCAAC
AACGGCCCTCGATGTGACGATTCAAGCCCAAATTATTGACTTGCTTAAGTCATTGCAGGCAGAATACCATTTCACGACTG
TCTTTATCACCCACGACCTTGGTGTTGTAGCAAGTATTGCTGATAAAGTGGCGGTTATGTATGCTGGCGAAATCGTTGAA
TATGGAACAGTTGAAGAAATCTTCTACGATCCAAAGCATCCATATACATGGAGCCTGCTATCTAGCTTGCCTCAGTTAGC
TGAAGCAAATGGTGAACTTTACTCGATCCCAGGTACACCACCATCGCTATATACTAGCATTAAAGGGGATGCTTTTGCAC
TTCGTTCGGACTATGCAATGGCTATCGATTTCGAAGAAAAGGCTCCTGCCTTTCAGGTTTCCGATACGCATTGGGCTAAG
ACCTGGCTCTTGCACGAAGATGCACCAAGAGTTGAGAAGCCAGCTATTATCGAAAACCTTCATGATAAAATTCGTTCAAA
AATGGGCTTCAATCACTTAGAAGCTTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.252

99.437

0.868
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

54.83

99.155

0.544