Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   G8E09_RS01740 Genome accession   NZ_CP049806
Coordinates   369107..372952 (+) Length   1281 a.a.
NCBI ID   WP_214286939.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364107..377952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01710 (G8E09_01710) gmk 364389..365018 (-) 630 WP_167562965.1 guanylate kinase -
  G8E09_RS01715 (G8E09_01715) ispH 365141..366091 (+) 951 WP_032036628.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G8E09_RS01720 (G8E09_01720) fimU 366261..366734 (+) 474 WP_167562966.1 pilus assembly FimT family protein Machinery gene
  G8E09_RS01725 (G8E09_01725) pilV 366728..367288 (+) 561 WP_167562967.1 type IV pilus modification protein PilV Machinery gene
  G8E09_RS01730 (G8E09_01730) pilW 367288..368289 (+) 1002 WP_167562968.1 PilW family protein Machinery gene
  G8E09_RS01735 (G8E09_01735) pilX 368286..369095 (+) 810 WP_167562969.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G8E09_RS01740 (G8E09_01740) pilY1 369107..372952 (+) 3846 WP_214286939.1 PilC/PilY family type IV pilus protein Machinery gene
  G8E09_RS01745 (G8E09_01745) pilY2 372963..373445 (+) 483 WP_167562970.1 type IV pilin protein Machinery gene
  G8E09_RS01750 (G8E09_01750) pilE 373442..373867 (+) 426 WP_086265003.1 type IV pilin protein Machinery gene
  G8E09_RS01755 (G8E09_01755) rpsP 374015..374266 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  G8E09_RS01760 (G8E09_01760) rimM 374286..374834 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  G8E09_RS01765 (G8E09_01765) trmD 374877..375632 (+) 756 WP_086265002.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G8E09_RS01770 (G8E09_01770) rplS 375852..376220 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  G8E09_RS01775 (G8E09_01775) lip 376273..377214 (-) 942 WP_080591800.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1281 a.a.        Molecular weight: 137484.09 Da        Isoelectric Point: 7.4363

>NTDB_id=427974 G8E09_RS01740 WP_214286939.1 369107..372952(+) (pilY1) [Acinetobacter pittii strain A1254]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLTASGSTPSAHAYAEAAAYLM
GTTTYSEMNYVIRKESYIKRVRRSDNKTEYSSCTNSSQVDINTLSQACRSNGWSSWTTFNPGVNTLTDYETSSDRYYDYT
YYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTRSAT
VMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRT
QSERKGDDVCSPNQTTNAVAAPGYGNGGFFPTQSAQGVTDSVIAFINNLEKVPLQPLTTGAISVPYDALNPKNLQEYGYL
RALEPNPANTYLTWRGNLKKYHVVLSGGNAGAFEANTGGLVYNASGAFRTGTKDYWNSSNYNDGGNVFLGGSYAKVPVPI
VGQNETRDEDGNIIKYYYAVQTKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAAPPEGTNPFDSVANTASYVLGRFNA
STGQDILKAFPIGLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQSILY
GTMEGGLHIVDASTGVEQMAFLPADILNDPVASKALVVGQSDATAPAHGMDGAWVSDAAYSITTTGSGSSAVSKVTAKQM
NIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNITLS
NSCFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLNNNQ
TKTNSNYSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLTGRE
GMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGAGQNGWYRSL
SSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTYCLPFGACLNSDGTINR
DKEEDSGFQTQTGSNCPVGASECNKDVIGSGIRGIAFVPKRDEPPVTNSCGKLQLAGNESGTGEWQCTSHLVPARWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=427974 G8E09_RS01740 WP_214286939.1 369107..372952(+) (pilY1) [Acinetobacter pittii strain A1254]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCGGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCGGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAATAATAGTTATGGTGAAAACCGTCTGGCCATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGATACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAG
TGGACAAATTTTGGTGGCCGCTGCTCCCTTAGGGGATGCGAGTACTTTAAATACAGTGGGTTCTCAGCGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTAGCGGGTCAACACCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATG
GGTACAACGACATATTCAGAAATGAATTATGTTATTCGTAAAGAAAGCTATATCAAACGAGTAAGACGATCCGATAATAA
AACTGAATACTCATCTTGTACCAATTCTTCACAAGTTGATATTAATACTTTAAGTCAAGCATGCCGTTCTAATGGCTGGA
GTAGTTGGACCACGTTCAATCCTGGAGTAAATACATTAACAGATTATGAGACTTCATCTGATCGGTATTATGATTATACT
TATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAATGATACAGCTAG
CAATCCGAATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCTATTTACCAATCTCCTTTGCCTGCGGTAGCCAATC
GCCAGAGTTGTGATGGGCAAGGTATCTACTTTTTATCAGATGGGGAGCCTAACAATACAACAAATACGCGTTCGGCAACT
GTCATGTCGACAGCCCTAGGCAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTGTCTAACACGACAGCAGACTC
TGGTTGGGCTTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAACCCAGCTGGAGTTTCTATTCAAACAG
CATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAGAATGCCTGTCGTTTAAGTTCGAGAACC
CAATCTGAGCGAAAAGGAGATGATGTGTGTTCGCCGAATCAGACCACAAATGCGGTCGCTGCACCTGGTTATGGGAATGG
AGGTTTTTTCCCTACCCAAAGTGCACAAGGTGTAACAGACAGCGTTATCGCATTTATTAATAACCTAGAAAAAGTTCCGT
TACAACCCTTAACCACTGGCGCTATCTCAGTTCCTTATGATGCACTAAACCCTAAAAATTTACAGGAATATGGTTACTTA
CGGGCTTTAGAGCCAAACCCGGCTAACACATACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCAGG
GGGCAATGCAGGTGCTTTTGAAGCTAACACTGGTGGGTTGGTTTACAATGCAAGTGGGGCTTTTAGAACGGGTACGAAAG
ATTATTGGAATAGCTCTAATTATAATGATGGAGGTAACGTCTTTTTAGGTGGTTCATATGCAAAAGTTCCTGTACCAATT
GTGGGACAAAATGAAACACGTGATGAAGATGGAAATATCATAAAATATTATTACGCAGTACAAACTAAAATCCGTAACTT
ATTTACTGATGTTTCCGCTGTTGCGGCGGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGCTAAAAATTC
CAGCTGCTCCCCCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAGATTTAATGCA
TCAACTGGACAAGATATTTTAAAAGCTTTTCCGATTGGCTTGAAATTAAAAATATTAAATTATCTAGGTTACTCAACTGA
TATTAGTGCTACGACCTTACCTTCGTCATTAGTTACATCCAATGAACCCTATTTATCGATGGGCGGTAGTATTCACTCTT
TACCGGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCCATTCTCTAT
GGAACAATGGAAGGCGGTTTGCATATTGTGGATGCATCAACAGGGGTAGAACAAATGGCTTTCCTTCCCGCTGATATATT
AAATGATCCCGTTGCATCAAAAGCTTTAGTGGTTGGCCAAAGTGATGCTACAGCTCCTGCTCATGGTATGGATGGGGCTT
GGGTATCTGACGCTGCATATAGTATTACTACAACTGGAAGCGGTAGCTCAGCAGTATCAAAAGTAACTGCAAAGCAAATG
AATATTTATGGTGGCATGCGAATGGGGGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACCTAAGCTCCT
GTTTAGAGTAGGAGCGGATCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAAATATACGTT
ATAACGGTGTTATTAAACGGGTTATGATTGTTGGTGGTGGCTACGATCAATGTTATGAAAACCCGAATATTACTTTGAGT
AACTCTTGCTTTACGAATGGAAAAGCAAAAGGGAACGCTGTTTATATTATTGATGCTAAAACTGGGCAGCGCTTATGGTG
GACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCTTAGATCGAG
ATGCTGATGGTTTGGTAGACCATTTATATTTTGGCGATTTAGGCGGGCAAATTTTCCGTATCGATCTTAATAATAACCAG
ACAAAAACAAATTCAAATTATAGCAGTTTCGGTATTCGAGTTGTTCGATTAGCCAATTTAGCAACGAATGACTCAACTTA
TGATGCTTCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCATGATTATGGAA
TCCGCACTTTTATTACTGTCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACAGGTCGTGAG
GGGATGTCACCGAGCACCGCATTAAGCGGAAGACCTGTAAACAATGTTTATGGAATTATCGACAAAGATTTTATTAAAAA
GAATTTAATGTCTTTAACAGATAGCCAGCTTGAAACAAAAGATATTACTCGATCGACGCTTCGAAAAAATCCACAAATTT
TACGATCTGGAGAAACACGAGTAGCACAGATTTTCTTTCCCAACACTGGGGCGGGACAAAATGGTTGGTATCGTTCACTT
TCTAGTATGAGCGATGGTACCGAGAAAGCTAATAATAGTTTCCGTATTAAAGGTGGGCTAAAAGCTTTTGAAGAGCCTAT
GGCAATTACAGGGACTTTAATTGTGCCTGTTTATGACCCGCAGGGAACAGGTATTGTTGCGGCAGACCCATGTTTACCCC
GTGTAGTAGGTGAAACGGATCAACAGACTTACTGTTTACCATTTGGTGCCTGTCTTAATTCTGATGGAACGATTAATCGT
GATAAAGAAGAGGATAGCGGGTTTCAAACACAAACGGGTAGTAACTGCCCAGTAGGAGCTTCTGAATGTAATAAAGATGT
TATTGGCTCCGGTATTCGCGGCATAGCATTTGTTCCAAAAAGAGATGAACCTCCAGTGACTAATAGTTGTGGGAAATTAC
AACTGGCTGGAAACGAGAGTGGAACTGGCGAGTGGCAATGTACAAGTCACTTAGTTCCTGCGCGCTGGTATGAGCGTTAT
CGCTAA

Domains

Predicted by InterproScan.

von Willebrand factor type A domain (VWA_2)

(51-162)

Neisseria PilC beta-propeller domain (T4P_PilY1)

(712-962)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

83.994

100

0.844