Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   G8E09_RS01720 Genome accession   NZ_CP049806
Coordinates   366261..366734 (+) Length   157 a.a.
NCBI ID   WP_167562966.1    Uniprot ID   A0A6H0FQA6
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361261..371734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01695 (G8E09_01695) spoT 361723..363828 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  G8E09_RS01700 (G8E09_01700) - 363844..363999 (-) 156 Protein_327 hypothetical protein -
  G8E09_RS01705 (G8E09_01705) rpoZ 364038..364316 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  G8E09_RS01710 (G8E09_01710) gmk 364389..365018 (-) 630 WP_167562965.1 guanylate kinase -
  G8E09_RS01715 (G8E09_01715) ispH 365141..366091 (+) 951 WP_032036628.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G8E09_RS01720 (G8E09_01720) fimU 366261..366734 (+) 474 WP_167562966.1 pilus assembly FimT family protein Machinery gene
  G8E09_RS01725 (G8E09_01725) pilV 366728..367288 (+) 561 WP_167562967.1 type IV pilus modification protein PilV Machinery gene
  G8E09_RS01730 (G8E09_01730) pilW 367288..368289 (+) 1002 WP_167562968.1 PilW family protein Machinery gene
  G8E09_RS01735 (G8E09_01735) pilX 368286..369095 (+) 810 WP_167562969.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16945.62 Da        Isoelectric Point: 7.7942

>NTDB_id=427970 G8E09_RS01720 WP_167562966.1 366261..366734(+) (fimU) [Acinetobacter pittii strain A1254]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKSIATDGTQSSLTTTTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=427970 G8E09_RS01720 WP_167562966.1 366261..366734(+) (fimU) [Acinetobacter pittii strain A1254]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATTCTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAGTATCGCTACTGATGGTACGCAGAGTTCGTTAAC
AACGACGACTTTAACTTTTAATGCGAATGGGGTGATAACTAATATCACCCAAGATACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0FQA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879