Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   G8E09_RS01725 Genome accession   NZ_CP049806
Coordinates   366728..367288 (+) Length   186 a.a.
NCBI ID   WP_167562967.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 361728..372288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01700 (G8E09_01700) - 363844..363999 (-) 156 Protein_327 hypothetical protein -
  G8E09_RS01705 (G8E09_01705) rpoZ 364038..364316 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  G8E09_RS01710 (G8E09_01710) gmk 364389..365018 (-) 630 WP_167562965.1 guanylate kinase -
  G8E09_RS01715 (G8E09_01715) ispH 365141..366091 (+) 951 WP_032036628.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G8E09_RS01720 (G8E09_01720) fimU 366261..366734 (+) 474 WP_167562966.1 pilus assembly FimT family protein Machinery gene
  G8E09_RS01725 (G8E09_01725) pilV 366728..367288 (+) 561 WP_167562967.1 type IV pilus modification protein PilV Machinery gene
  G8E09_RS01730 (G8E09_01730) pilW 367288..368289 (+) 1002 WP_167562968.1 PilW family protein Machinery gene
  G8E09_RS01735 (G8E09_01735) pilX 368286..369095 (+) 810 WP_167562969.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence


Protein


Download         Length: 186 a.a.        Molecular weight: 19867.91 Da        Isoelectric Point: 7.9110

>NTDB_id=427971 G8E09_RS01725 WP_167562967.1 366728..367288(+) (pilV) [Acinetobacter pittii strain A1254]
MLMQGSKQKAQIGVGLLEVLVALILIAIGVLGYVALQVRAMDASSEALSKSQAIMIMRGLAENIRVNSSQASQYPAFVRS
YSNYSSATTAPTLCFNAACTPSQLAQFDAYQAARNADQLGMKITMTNCPGVTSTMAQQRQCLFVFWGKTAPVITTNEGVT
SADVSSCMSTNGVYVNNSNCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=427971 G8E09_RS01725 WP_167562967.1 366728..367288(+) (pilV) [Acinetobacter pittii strain A1254]
ATGTTAATGCAGGGCTCTAAACAAAAAGCTCAAATTGGGGTGGGTTTATTAGAAGTGTTGGTTGCCCTAATTTTAATTGC
GATAGGGGTTTTAGGATATGTTGCCTTGCAAGTCCGTGCTATGGATGCTTCTTCAGAGGCATTAAGTAAATCTCAAGCGA
TTATGATCATGAGAGGATTAGCAGAAAACATTCGCGTAAATAGTTCTCAAGCTAGTCAGTATCCTGCATTTGTACGTAGT
TATAGCAACTATTCATCTGCCACCACTGCTCCTACTTTGTGTTTCAATGCAGCTTGTACACCTTCTCAGCTTGCCCAATT
TGATGCATATCAAGCAGCAAGAAATGCTGATCAACTTGGCATGAAAATTACAATGACAAATTGCCCAGGGGTTACAAGCA
CAATGGCCCAGCAGAGGCAATGTTTGTTTGTTTTTTGGGGAAAAACCGCTCCAGTAATTACAACAAATGAGGGAGTCACG
AGCGCGGATGTGTCGAGCTGTATGAGTACAAATGGCGTTTATGTCAATAATTCGAACTGTTTAATGATGGAGGCATATTA
A

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

84.409

100

0.844

  pilV Acinetobacter baylyi ADP1

36.559

100

0.366