Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G8E09_RS01750 Genome accession   NZ_CP049806
Coordinates   373442..373867 (+) Length   141 a.a.
NCBI ID   WP_086265003.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368442..378867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01740 (G8E09_01740) pilY1 369107..372952 (+) 3846 WP_214286939.1 PilC/PilY family type IV pilus protein Machinery gene
  G8E09_RS01745 (G8E09_01745) pilY2 372963..373445 (+) 483 WP_167562970.1 type IV pilin protein Machinery gene
  G8E09_RS01750 (G8E09_01750) pilE 373442..373867 (+) 426 WP_086265003.1 type IV pilin protein Machinery gene
  G8E09_RS01755 (G8E09_01755) rpsP 374015..374266 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  G8E09_RS01760 (G8E09_01760) rimM 374286..374834 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  G8E09_RS01765 (G8E09_01765) trmD 374877..375632 (+) 756 WP_086265002.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G8E09_RS01770 (G8E09_01770) rplS 375852..376220 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  G8E09_RS01775 (G8E09_01775) lip 376273..377214 (-) 942 WP_080591800.1 lipase family alpha/beta hydrolase -
  G8E09_RS01780 (G8E09_01780) - 377330..378361 (-) 1032 WP_167562971.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15141.31 Da        Isoelectric Point: 7.8471

>NTDB_id=427976 G8E09_RS01750 WP_086265003.1 373442..373867(+) (pilE) [Acinetobacter pittii strain A1254]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATNCALSAASNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=427976 G8E09_RS01750 WP_086265003.1 373442..373867(+) (pilE) [Acinetobacter pittii strain A1254]
ATGAAGAATGGTTTTACCTTAATAGAACTCATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTCCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACTATTACTTCGATTTATGGGTCTAGTGTCAGCCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTTGCTAGCATAACAGATTCAAGCTGGGTGTTAACTGCCACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACGAATTGTGCGTTAT
CTGCCGCATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518