Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   G8E09_RS01745 Genome accession   NZ_CP049806
Coordinates   372963..373445 (+) Length   160 a.a.
NCBI ID   WP_167562970.1    Uniprot ID   A0A6H0FQA5
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367963..378445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01735 (G8E09_01735) pilX 368286..369095 (+) 810 WP_167562969.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G8E09_RS01740 (G8E09_01740) pilY1 369107..372952 (+) 3846 WP_214286939.1 PilC/PilY family type IV pilus protein Machinery gene
  G8E09_RS01745 (G8E09_01745) pilY2 372963..373445 (+) 483 WP_167562970.1 type IV pilin protein Machinery gene
  G8E09_RS01750 (G8E09_01750) pilE 373442..373867 (+) 426 WP_086265003.1 type IV pilin protein Machinery gene
  G8E09_RS01755 (G8E09_01755) rpsP 374015..374266 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  G8E09_RS01760 (G8E09_01760) rimM 374286..374834 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  G8E09_RS01765 (G8E09_01765) trmD 374877..375632 (+) 756 WP_086265002.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G8E09_RS01770 (G8E09_01770) rplS 375852..376220 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  G8E09_RS01775 (G8E09_01775) lip 376273..377214 (-) 942 WP_080591800.1 lipase family alpha/beta hydrolase -
  G8E09_RS01780 (G8E09_01780) - 377330..378361 (-) 1032 WP_167562971.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17590.90 Da        Isoelectric Point: 8.8104

>NTDB_id=427975 G8E09_RS01745 WP_167562970.1 372963..373445(+) (pilY2) [Acinetobacter pittii strain A1254]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTRTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=427975 G8E09_RS01745 WP_167562970.1 372963..373445(+) (pilY2) [Acinetobacter pittii strain A1254]
ATGAATAAATATTATATTCTGCGTTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGACATAAATCCAAGAACTTTACTTATAGAGGATTTACGACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGACGATACGAGGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCAGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0FQA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.698

100

0.438