Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GTQ41_RS02160 Genome accession   NZ_CP049737
Coordinates   478235..480307 (+) Length   690 a.a.
NCBI ID   WP_047290894.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-B15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473235..485307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ41_RS02140 (GTQ41_02140) pilM 475447..476511 (+) 1065 WP_047290890.1 pilus assembly protein PilM Machinery gene
  GTQ41_RS02145 (GTQ41_02145) - 476511..477077 (+) 567 WP_047290891.1 PilN domain-containing protein -
  GTQ41_RS02150 (GTQ41_02150) pilO 477074..477697 (+) 624 WP_047290892.1 type 4a pilus biogenesis protein PilO -
  GTQ41_RS02155 (GTQ41_02155) - 477694..478221 (+) 528 WP_047290893.1 pilus assembly protein PilP -
  GTQ41_RS02160 (GTQ41_02160) pilQ 478235..480307 (+) 2073 WP_047290894.1 type IV pilus secretin PilQ Machinery gene
  GTQ41_RS02165 (GTQ41_02165) aroK 480312..480830 (+) 519 WP_027611316.1 shikimate kinase AroK -
  GTQ41_RS02170 (GTQ41_02170) aroB 480982..482082 (+) 1101 WP_041074910.1 3-dehydroquinate synthase -
  GTQ41_RS02175 (GTQ41_02175) - 482093..483682 (+) 1590 WP_047290895.1 AAA family ATPase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 74796.01 Da        Isoelectric Point: 5.4039

>NTDB_id=427409 GTQ41_RS02160 WP_047290894.1 478235..480307(+) (pilQ) [Pseudomonas sp. AN-B15]
MNRIFSTLGFSLWIALLSPMVQAASLQALDVAALPGDRIELKLAFDGPPPQPKGYTTESPARIALDLPGVASQLTNKTRD
LGSGNARSATVVEASDRTRLIINLTQLTPYTSRVEGNNLFVVVGQGAKPAAPRPAAAAPRPVAAPAKAYTPAAKTIRGVD
FQRGTAGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPDRLRVRLDVKDFATPVQFVNAAATGDRAVITVEPSGTFD
YSTYQTDNKLTVSIRPMTVDDLQKRNADRNSYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPW
DQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAKID
ERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSNGT
STTIGTPGSTSTNSPFVDMGTVGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQE
ASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQ
SKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=427409 GTQ41_RS02160 WP_047290894.1 478235..480307(+) (pilQ) [Pseudomonas sp. AN-B15]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGCTTTCACCGATGGTTCAGGCGGCCAGTCTCCA
GGCGCTGGATGTTGCGGCGTTACCGGGTGACCGTATCGAGTTGAAGCTGGCGTTTGACGGCCCGCCACCGCAACCCAAGG
GCTACACCACCGAATCGCCGGCGCGAATCGCCCTGGATCTGCCGGGTGTCGCCAGCCAACTGACGAACAAGACCCGCGAT
CTGGGCAGCGGCAACGCCCGCAGTGCGACAGTGGTCGAAGCCAGCGACCGTACGCGTCTGATCATCAATCTGACGCAACT
GACGCCGTATACCTCACGGGTCGAGGGCAACAATCTGTTCGTGGTGGTCGGGCAGGGTGCCAAGCCTGCTGCGCCAAGGC
CTGCCGCTGCTGCGCCGCGACCGGTTGCGGCTCCGGCGAAGGCTTACACCCCTGCCGCCAAAACCATTCGTGGCGTCGAT
TTCCAGCGCGGTACTGCAGGGGAGGGGAATGTGGTCATCGACCTTTCCGACCCGACCATCGCCCCGGACATCCAGGAGCA
TGACGGCAAGATCATTCTCAGCTTTGCCCGCACCCAGTTGCCCGACAGGCTGCGGGTACGCCTCGACGTCAAGGACTTCG
CCACCCCGGTGCAGTTCGTCAATGCCGCTGCCACTGGCGATCGTGCGGTCATCACCGTCGAACCCAGCGGCACGTTCGAC
TATTCCACCTACCAGACCGATAACAAGCTGACCGTCAGCATTCGCCCGATGACCGTCGATGATCTGCAAAAGCGCAATGC
CGACCGCAACAGCTACAGCGGCGAAAAGCTTTCGCTGAATTTCCAGGACATCGACGTGCGCTCGGTGCTGCAACTGATCG
CCGATTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGGATCACCTTGCGTCTGCAGAACGTGCCGTGG
GACCAGGCGCTGGACCTGGTGCTGAAGACCAAGGGGCTGGATAAACGCAAGATCGGCAACGTGTTGCTGGTGGCGCCGGC
CGACGAAATCGCCGCCCGCGAACGCCAGGAACTGGAATCGCAGAAGCAGATCGCTGAGTTGGCACCGCTGCGTCGCGAGC
TGCTGCAAGTGAACTACGCCAAAGCGGCGGACATTGCCAAGCTGTTCCAGTCGGTCACCAGCGCCGAAGCGAAAATCGAT
GAACGCGGCTCGATCACGGTCGATGAACGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGACGAACTGCG
GCGGATCGTGGCGCAGCTGGATATCCCGGTGCGTCAGGTGATGATCGAAGCGCGGATCGTCGAAGCCAACGTTGATTACG
ACAAGAGCCTGGGCGTGCGCTGGGGCGGTTCGATCCAGAACAAGGGCAACTGGAACACCTCCGGGGTCAGTAACGGCACC
TCGACCACCATCGGCACACCGGGCAGTACCAGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCGGTAACACATCCGG
GATCGGCATCGCTTTTATTACCGACAATGTGTTGCTCGATCTTGAGCTGACCGCCATGGAAAAGACCGGCAATGGTGAAA
TCGTCTCCCAGCCGAAAGTGGTTACCTCCGACAAGGAGACCGCGAAAATCCTCAAAGGCACCGAGATTCCGTACCAGGAA
GCCAGCTCCAGCGGTGCGACGTCGGTGTCGTTCAAGGAGGCTTCGCTGTCGCTGGAAGTGACGCCGCAGATCACCCCCGA
CAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAGGTGCAGGATGTGCCGCCGATCA
AGAAGAACGAAGTCAACGCCAAAGTGCTGGTAAACGACGGTGAGACCATCGTGATTGGGGGCGTTTTCTCAAATACTCAA
AGCAAGGTCGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGA
GAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(300-346)

AMIN domain (AMIN)

(37-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(374-439)

Bacterial type II and III secretion system protein (Secretin)

(525-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.287

100

0.759
  pilQ Acinetobacter baumannii D1279779

38.482

100

0.419
  pilQ Acinetobacter baumannii strain A118

38.554

100

0.417
  comQ Acinetobacter baylyi ADP1

41.1

100

0.412
  pilQ Legionella pneumophila strain ERS1305867

38.003

97.246

0.37
  pilQ Legionella pneumophila strain Lp02

38.003

97.246

0.37