Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GYO_RS39595 Genome accession   NC_016047
Coordinates   3503250..3503846 (+) Length   198 a.a.
NCBI ID   WP_014115260.1    Uniprot ID   G4P131
Organism   Bacillus spizizenii TU-B-10     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3498250..3508846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS39565 (GYO_3782) aspP 3499224..3500786 (+) 1563 WP_014115255.1 aspartate/proton symporter AspP -
  GYO_RS39570 (GYO_3783) - 3500881..3501465 (+) 585 WP_014115256.1 TetR family transcriptional regulator -
  GYO_RS39575 (GYO_3784) - 3501547..3501882 (+) 336 WP_014115257.1 multidrug efflux SMR transporter -
  GYO_RS39580 (GYO_3785) - 3501882..3502196 (+) 315 WP_014115258.1 multidrug efflux SMR transporter -
  GYO_RS39585 (GYO_3786) - 3502238..3502750 (-) 513 WP_014115259.1 DUF3231 family protein -
  GYO_RS39595 (GYO_3788) clpP 3503250..3503846 (+) 597 WP_014115260.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  GYO_RS39600 (GYO_3789) pgmB 3503916..3504590 (-) 675 WP_014115261.1 beta-phosphoglucomutase -
  GYO_RS39605 (GYO_3790) malL 3504587..3506272 (-) 1686 WP_014115262.1 oligo-1,6-glucosidase -
  GYO_RS39610 (GYO_3791) - 3506265..3508538 (-) 2274 WP_014115263.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21859.11 Da        Isoelectric Point: 4.7048

>NTDB_id=42614 GYO_RS39595 WP_014115260.1 3503250..3503846(+) (clpP) [Bacillus spizizenii TU-B-10]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTDEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=42614 GYO_RS39595 WP_014115260.1 3503250..3503846(+) (clpP) [Bacillus spizizenii TU-B-10]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCTGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCAAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGCGCGTTCCTGCTTGCTGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAATAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCAA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTTCTTGCTGAGCGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGATACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
TAAAATTCTGACTCGCAACACAGATGAGCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P131

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

95.939

99.495

0.955
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae Rx1

57.732

97.98

0.566
  clpP Streptococcus pneumoniae D39

57.732

97.98

0.566
  clpP Streptococcus pneumoniae R6

57.732

97.98

0.566
  clpP Streptococcus pneumoniae TIGR4

57.732

97.98

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54

Multiple sequence alignment