Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Machinery gene
Locus tag   G4V51_RS08740 Genome accession   NZ_CP048908
Coordinates   1684764..1685996 (+) Length   410 a.a.
NCBI ID   WP_003689811.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH203     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1679764..1690996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V51_RS08725 fabI 1680640..1681425 (-) 786 WP_002223367.1 enoyl-ACP reductase FabI -
  G4V51_RS08730 dapD 1681580..1682401 (-) 822 WP_003689804.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  G4V51_RS08735 pgi 1682611..1684254 (-) 1644 WP_003689806.1 glucose-6-phosphate isomerase -
  G4V51_RS08740 pilG 1684764..1685996 (+) 1233 WP_003689811.1 type 4 pilus assembly protein PilG Machinery gene
  G4V51_RS08745 pilD 1686070..1686930 (+) 861 WP_003689814.1 prepilin peptidase Machinery gene
  G4V51_RS08750 coaE 1686927..1687559 (+) 633 WP_003689816.1 dephospho-CoA kinase -
  G4V51_RS08755 - 1687552..1687761 (+) 210 WP_003696096.1 DNA gyrase inhibitor YacG -
  G4V51_RS08760 pilF 1687847..1689523 (-) 1677 WP_003689817.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4V51_RS08770 - 1689861..1690307 (-) 447 WP_003689818.1 DUF441 domain-containing protein -

Sequence


Protein


Download         Length: 410 a.a.        Molecular weight: 45332.36 Da        Isoelectric Point: 10.0085

>NTDB_id=424056 G4V51_RS08740 WP_003689811.1 1684764..1685996(+) (pilG) [Neisseria gonorrhoeae strain SRRSH203]
MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLS
TMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMVLIALGFAI
YGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTIARWGRTTATLFAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRV
IQGLSMTSGMRATELFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYL
PLFNLGNVVA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=424056 G4V51_RS08740 WP_003689811.1 1684764..1685996(+) (pilG) [Neisseria gonorrhoeae strain SRRSH203]
ATGGCTAAAAATGGGGGATTTTCTTTGTTCGCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCTGCCTCCGA
CAAACTGGTCAACGGCGAAGTATCCGCGTTTACCGAAGAAGAGGCACGCAAAAAACTGGCAAAACGCGGCATCCGCCCGT
TGCAGATTACCCGTGTGAAAACAAGCTCCAAGCGCAAAATCACACAAGAAGACATTACCGTTTTCACCCGCCAGCTTTCC
ACGATGATTAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAAATCGTGGCGCGCGGACACGGCAACCCGTCTATGACGGA
AATGCTGATGGAAATCCGAGGCCAAGTGGAACAGGGCAGCTCGTTGAGCCGCGCATTCTCAAACCACCCGAAATATTTCG
ACCGCTTCTACTGCAACCTGGTTGCGGCGGGCGAAACGGGCGGTGTATTGGAAAGCCTGCTGGACAAATTGGCAATTTAC
AAGGAAAAAACCCAGGCCATCCGCAAAAAGGTAAAAACCGCGCTAACCTATCCGGTATCCGTCATCGCCGTCGCCATCGG
TTTGGTATTCGTGATGATGATTTTCGTACTGCCCGCCTTTAAAGAAGTTTACGCCAATATGGGCGCGGAGCTTCCCCCAC
TGACCCAAACAGTGATGGATATGTCCGACTTTTTCGTCTCATACGGCTGGATGGTGCTGATCGCACTGGGCTTTGCCATA
TACGGCTTCCTTAAATTGAAGGCGCGTTCGATTAAAATCCAACGGCGTATGGATGCCATACTGCTGCGTATGCCGATTTT
CGGAGACATTGTCCGCAAAGGGACGATTGCCCGCTGGGGCAGGACGACGGCAACGCTGTTTGCCGCCGGCGTGCCTTTGG
TCGATGTATTGGACTCCACTGCCGGCGCGGCGGGCAATTTAATCTATGAAGAAGCCACCCGGGAAATCCGTACGCGCGTC
ATCCAAGGTCTGTCTATGACTTCGGGGATGCGTGCGACGGAACTGTTCCCCAATATGATGTTGCAGATGTCCTCCATCGG
CGAGGAATCGGGTTCTTTGGACGATATGCTCAACAAAGCCGCCGAATTTTACGAAGACGAGGTGGACAATGCGGTCGGCA
GGCTGTCCGCTATGATGGAGCCGATTATTATTGTGATTTTGGGCTTGGTCATCGGTACGCTTCTGGTCGCTATGTATCTG
CCGCTGTTCAACTTGGGCAACGTGGTCGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

100

100

1

  pilG Neisseria meningitidis 44/76-A

98.78

100

0.988

  pilC Acinetobacter baumannii D1279779

47.236

97.073

0.459

  pilC Acinetobacter baylyi ADP1

45.363

97.317

0.441

  pilC Pseudomonas stutzeri DSM 10701

44.665

98.293

0.439

  pilC Legionella pneumophila strain ERS1305867

44.836

96.829

0.434

  pilC Vibrio cholerae strain A1552

41.294

98.049

0.405

  pilC Vibrio campbellii strain DS40M4

39.163

99.024

0.388