Detailed information NTG0423591

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IE857_RS05630
• Genome accession: NZ_CP061914
• Coordinates: 1178770..1179762 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SMBL
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1173770..1184762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IE857_RS05600 (IE857_05600)	ispD	1173831..1174541 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IE857_RS05605 (IE857_05605)	ispF	1174541..1175020 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IE857_RS05610 (IE857_05610)	truD	1175017..1176066 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
IE857_RS05615 (IE857_05615)	surE	1176047..1176808 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
IE857_RS05620 (IE857_05620)	pcm	1176802..1177428 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IE857_RS05625 (IE857_05625)	nlpD	1177613..1178707 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IE857_RS05630 (IE857_05630)	rpoS	1178770..1179762 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IE857_RS05635 (IE857_05635)	-	1179883..1180290 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
IE857_RS05640 (IE857_05640)	-	1180437..1181030 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
IE857_RS05645 (IE857_05645)	-	1181030..1182457 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
IE857_RS05650 (IE857_05650)	-	1182468..1182704 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
IE857_RS05655 (IE857_05655)	ygbN	1182743..1184107 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=423591 IE857_RS05630 WP_000081550.1 1178770..1179762(+) (rpoS) [Escherichia coli strain SMBL]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=423591 IE857_RS05630 WP_000081550.1 1178770..1179762(+) (rpoS) [Escherichia coli strain SMBL]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715