Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   G4P54_RS17795 Genome accession   NZ_CP048852
Coordinates   3366744..3367334 (+) Length   196 a.a.
NCBI ID   WP_014665471.1    Uniprot ID   -
Organism   Bacillus tequilensis strain EA-CB0015     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3361744..3372334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS17765 (G4P54_17715) - 3361992..3362327 (+) 336 WP_024713432.1 DMT family transporter -
  G4P54_RS17770 (G4P54_17720) - 3362327..3362647 (+) 321 WP_024713431.1 DMT family transporter -
  G4P54_RS17775 (G4P54_17725) - 3362684..3363195 (-) 512 Protein_3468 DUF3231 family protein -
  G4P54_RS17780 (G4P54_17730) - 3363440..3364783 (-) 1344 WP_167873395.1 FAD-binding oxidoreductase -
  G4P54_RS17785 (G4P54_17735) cotR 3365148..3366110 (+) 963 WP_167873396.1 sporulation hydrolase CotR -
  G4P54_RS17795 (G4P54_17745) clpP 3366744..3367334 (+) 591 WP_014665471.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  G4P54_RS17800 (G4P54_17750) pgmB 3367393..3368064 (-) 672 WP_167873397.1 beta-phosphoglucomutase -
  G4P54_RS17805 (G4P54_17755) - 3368061..3369746 (-) 1686 WP_167873398.1 glycoside hydrolase family 13 protein -
  G4P54_RS17810 (G4P54_17760) - 3369739..3372012 (-) 2274 WP_167873913.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21553.82 Da        Isoelectric Point: 4.8025

>NTDB_id=423591 G4P54_RS17795 WP_014665471.1 3366744..3367334(+) (clpP) [Bacillus tequilensis strain EA-CB0015]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=423591 G4P54_RS17795 WP_014665471.1 3366744..3367334(+) (clpP) [Bacillus tequilensis strain EA-CB0015]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG
AAGACCCTGAAAAAGAAATTTCTCTTTACATTAACAGCCCGGGCGGTTCTATCACTGCCGGTATGGCGATCTATGATACT
ATGCAGTTTATTAAGCCGAAGGTATCTACCATTTGTATCGGTATGGCTGCTTCAATGGGCGCGTTCCTGCTTGCAGCCGG
CGAAAAAGGCAAACGTTACGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCGA
CAGAAATTGAAATTGCTGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTTTGACTCACACAGAAGATAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

100

100

1
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

95.918

0.658
  clpP Streptococcus thermophilus LMG 18311

58.163

100

0.582
  clpP Streptococcus thermophilus LMD-9

58.163

100

0.582
  clpP Streptococcus pneumoniae D39

57.812

97.959

0.566
  clpP Streptococcus pneumoniae Rx1

57.812

97.959

0.566
  clpP Streptococcus pneumoniae R6

57.812

97.959

0.566
  clpP Streptococcus pneumoniae TIGR4

57.812

97.959

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.895

96.939

0.561
  clpP Streptococcus pyogenes JRS4

56.122

100

0.561
  clpP Streptococcus pyogenes MGAS315

56.122

100

0.561
  clpP Streptococcus mutans UA159

54.822

100

0.551
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.789

96.939

0.541