Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G4G71_RS05485 Genome accession   NZ_CP048833
Coordinates   1197716..1199857 (+) Length   713 a.a.
NCBI ID   WP_169942523.1    Uniprot ID   -
Organism   Pseudomonas multiresinivorans strain populi     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1192716..1204857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS05465 (G4G71_05460) comM 1194837..1195901 (+) 1065 WP_024764148.1 pilus assembly protein PilM Machinery gene
  G4G71_RS05470 (G4G71_05465) pilN 1195901..1196494 (+) 594 WP_169935941.1 type 4a pilus biogenesis protein PilN -
  G4G71_RS05475 (G4G71_05470) pilO 1196491..1197141 (+) 651 WP_169935943.1 type 4a pilus biogenesis protein PilO -
  G4G71_RS05480 (G4G71_05475) pilP 1197138..1197662 (+) 525 WP_169935945.1 type 4a pilus biogenesis lipoprotein PilP -
  G4G71_RS05485 (G4G71_05480) pilQ 1197716..1199857 (+) 2142 WP_169942523.1 type IV pilus secretin PilQ Machinery gene
  G4G71_RS05490 (G4G71_05485) aroK 1199893..1200384 (+) 492 WP_052239087.1 shikimate kinase AroK -
  G4G71_RS05495 (G4G71_05490) aroB 1200435..1201541 (+) 1107 WP_169935947.1 3-dehydroquinate synthase -
  G4G71_RS05500 (G4G71_05495) - 1201548..1203221 (+) 1674 WP_169935949.1 AAA family ATPase -

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 75990.10 Da        Isoelectric Point: 5.1772

>NTDB_id=423396 G4G71_RS05485 WP_169942523.1 1197716..1199857(+) (pilQ) [Pseudomonas multiresinivorans strain populi]
MNKTLSRLGISVLAAVFAPTLLAANLQSVDVAALPGDRVELKLGFDEPVAAPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIVNLTTLVPYSTRAEGANLYVVVGGAGTASGSYASASPTPAAVAKPVQAKPYVPAGKAIR
NVDFQRGDQGEGNVVIDLSDPTVSPDIQEQGGKIRLDFPRTQLPDNLRVRLDVKDFATPVQFVNASASGDKASISIEPTG
LYDYLVYQTDNRMTVSIKPLTQDDAEKRKKDTFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQN
VPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELEAQKQISELAPLRRELIQVNYAKASDIAKLFSSVTGAGA
PGAPAAAQGDNRGSITVDDRTNSIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEASVDYSKSLGVRWGGAFTFGNW
ASWGKNGNIGTGGDSGTSCGPFGGGGCTLPTTNDSPTPSVDLGVTSSTSGIGIGFVSNNAILDLQLSAMEKGGNGEIVSQ
PKVVTSDKETAKILKGTEIPYQEASSSGATSVSFKEAALALEVTPQITPDNRIIMEVKVNKDEPDFANALNGVPPIKKNE
VNAKVLVNDGETIVIGGVFSNTQTKAVDKVPFLGDVPVLGRLFRRDSVTDSKNELLVFLTPRIMNNQAIAVGR

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=423396 G4G71_RS05485 WP_169942523.1 1197716..1199857(+) (pilQ) [Pseudomonas multiresinivorans strain populi]
ATGAATAAAACGCTTTCCCGCCTGGGCATTTCCGTGCTCGCGGCCGTATTCGCACCGACCCTGCTGGCTGCAAACCTGCA
GAGTGTTGACGTGGCGGCCCTGCCGGGCGACCGCGTGGAGCTCAAGCTCGGCTTCGACGAGCCGGTGGCCGCGCCGCGTG
GCTATACCATCGAGCAGCCTGCGCGTATCGCACTGGATCTGCCGGGCGTGCAGAACAAGCTGGGCAGCAAGAACCGCGAG
TTGGGTGTGGGTAATGCACGCAGCCTGACCGTGGTCGAGGCGAAGGACCGTACCCGGCTGATCGTCAACCTGACCACCCT
GGTGCCTTACAGCACGCGCGCCGAAGGTGCCAATCTGTATGTGGTGGTGGGTGGGGCAGGTACTGCTTCCGGTTCATACG
CTTCTGCTTCGCCGACTCCCGCTGCAGTTGCCAAGCCTGTACAGGCCAAGCCATACGTTCCGGCCGGCAAGGCAATCCGC
AACGTCGATTTCCAGCGCGGCGATCAGGGCGAAGGCAATGTCGTCATCGATCTCTCCGATCCGACGGTCAGCCCGGATAT
CCAGGAACAAGGCGGCAAGATCCGTCTGGATTTCCCTCGCACCCAGTTACCGGACAACCTGCGCGTTCGTCTGGATGTGA
AGGACTTCGCCACGCCGGTGCAGTTCGTCAATGCATCCGCTTCGGGCGACAAGGCCAGCATCTCGATCGAACCGACCGGG
CTGTATGACTATCTGGTCTATCAGACCGACAATCGCATGACCGTCAGTATCAAGCCGCTGACCCAGGACGATGCCGAGAA
GCGCAAGAAAGACACCTTTGCCTATACCGGCGAGAAGCTGTCGCTGAACTTCCAGGACATCGATGTGCGCTCTGTCTTGC
AGTTGATTGCCGACTTCACTGACCTGAACCTGGTGGCATCGGATACCGTGCAGGGCAACATCACCCTGCGTCTGCAGAAT
GTGCCTTGGGACCAGGCACTGGACCTGGTGCTCAAGACGAAGGGCCTGGACAAGCGCAAGGTCGGCAATGTGCTGCTGGT
TGCGCCGGCTGACGAAATCGCGGCTCGCGAGCGTCAGGAGCTGGAAGCGCAGAAGCAGATTTCCGAACTGGCCCCCTTGC
GCCGTGAGCTGATCCAGGTCAACTACGCCAAGGCATCGGATATCGCCAAACTGTTCAGCTCGGTGACTGGTGCGGGTGCT
CCAGGTGCTCCAGCCGCAGCGCAAGGTGATAATCGTGGATCAATCACCGTAGATGATCGTACCAACAGCATCATCGCCTA
CCAGACGCAGGATCGACTGGATGAGCTGCGCCGTATCGTTGCTCAGCTGGATATTCCGGTACGCCAGGTAATGATCGAGG
CGCGTATCGTTGAGGCGTCGGTCGACTACAGCAAAAGCCTTGGGGTTCGCTGGGGCGGTGCCTTCACCTTTGGCAACTGG
GCCAGTTGGGGCAAGAACGGAAACATTGGCACCGGCGGTGATAGCGGCACCAGCTGCGGTCCGTTCGGTGGTGGCGGCTG
TACTTTGCCGACAACCAACGATTCTCCCACGCCTTCGGTTGACCTTGGTGTAACCAGCAGCACTTCTGGCATCGGCATCG
GCTTCGTGTCCAACAATGCCATTCTGGACCTGCAGCTGTCGGCGATGGAGAAGGGCGGAAATGGTGAAATCGTTTCCCAG
CCGAAGGTCGTCACTTCCGACAAAGAGACCGCCAAGATTCTGAAGGGCACTGAGATTCCGTACCAGGAAGCCAGCTCCAG
TGGTGCAACCTCGGTATCCTTCAAGGAGGCCGCGCTTGCCTTGGAAGTGACCCCGCAGATCACGCCGGACAACCGCATCA
TCATGGAAGTGAAGGTCAACAAGGACGAGCCGGACTTCGCCAATGCGCTCAATGGTGTTCCGCCGATCAAGAAGAACGAA
GTGAATGCCAAGGTGCTGGTCAACGATGGCGAGACCATCGTGATCGGTGGCGTGTTCTCCAACACCCAGACCAAAGCCGT
GGACAAGGTTCCGTTCCTGGGTGACGTTCCGGTGCTGGGCCGACTGTTCCGTCGAGATTCGGTAACCGACAGCAAGAACG
AGCTGCTGGTTTTCCTAACCCCGCGGATCATGAATAATCAGGCCATTGCAGTCGGCCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-449)

Bacterial type II and III secretion system protein (Secretin)

(548-704)

AMIN domain (AMIN)

(40-121)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

80.529

100

0.812
  pilQ Acinetobacter baumannii D1279779

39.435

100

0.411
  pilQ Acinetobacter baumannii strain A118

39.435

100

0.411
  comQ Acinetobacter baylyi ADP1

42.037

97.756

0.411
  pilQ Legionella pneumophila strain Lp02

38.761

97.335

0.377
  pilQ Legionella pneumophila strain ERS1305867

38.484

96.213

0.37

Multiple sequence alignment