Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GOP56_RS15805 Genome accession   NZ_CP048799
Coordinates   3768711..3769178 (-) Length   155 a.a.
NCBI ID   WP_003334008.1    Uniprot ID   A0AAP3GAQ8
Organism   Brevibacillus sp. 7WMA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3763711..3774178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOP56_RS15785 (GOP56_15785) rplI 3764960..3765403 (-) 444 WP_003334013.1 50S ribosomal protein L9 -
  GOP56_RS15790 (GOP56_15790) - 3765419..3767356 (-) 1938 WP_163246033.1 DHH family phosphoesterase -
  GOP56_RS15795 (GOP56_15795) - 3767372..3768352 (-) 981 WP_163246034.1 DUF2232 domain-containing protein -
  GOP56_RS15800 (GOP56_15800) rpsR 3768428..3768658 (-) 231 WP_003334009.1 30S ribosomal protein S18 -
  GOP56_RS15805 (GOP56_15805) ssbA 3768711..3769178 (-) 468 WP_003334008.1 single-stranded DNA-binding protein Machinery gene
  GOP56_RS15810 (GOP56_15810) rpsF 3769203..3769490 (-) 288 WP_003334007.1 30S ribosomal protein S6 -
  GOP56_RS15815 (GOP56_15815) ychF 3769628..3770728 (-) 1101 WP_003344608.1 redox-regulated ATPase YchF -
  GOP56_RS24415 - 3771221..3771331 (-) 111 WP_371807972.1 hypothetical protein -
  GOP56_RS15820 (GOP56_15820) - 3771371..3772081 (-) 711 WP_022586018.1 hypothetical protein -
  GOP56_RS15825 (GOP56_15825) - 3772204..3772419 (+) 216 WP_022586017.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16981.84 Da        Isoelectric Point: 5.2753

>NTDB_id=423092 GOP56_RS15805 WP_003334008.1 3768711..3769178(-) (ssbA) [Brevibacillus sp. 7WMA2]
MLNRVILIGNLTKDPELRYTPNGVAVTTFTLAINRPYSGAGGEKETDFINIVAWRQLADLCANYLRKGRKAAVEGRLQTR
SYDNKEGKRVYVTEVVADNVQFLSSREASEGNTGYDPGPSYGGTRPASKGNNDSFNDPFADSGKPINISDDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=423092 GOP56_RS15805 WP_003334008.1 3768711..3769178(-) (ssbA) [Brevibacillus sp. 7WMA2]
ATGCTAAATCGTGTTATTCTAATTGGAAACTTAACCAAGGACCCTGAATTGCGTTATACGCCCAATGGTGTTGCGGTAAC
GACCTTTACCTTGGCGATAAATCGTCCTTATTCTGGAGCCGGTGGCGAAAAAGAAACGGACTTTATCAATATTGTAGCAT
GGCGTCAATTGGCTGATCTATGTGCAAACTATCTTCGTAAAGGTAGAAAAGCTGCTGTAGAAGGTCGTTTACAAACCAGA
AGCTATGATAATAAAGAAGGTAAAAGAGTATACGTAACAGAAGTTGTCGCAGATAACGTGCAATTCCTAAGCTCACGTGA
AGCGAGTGAAGGAAACACCGGCTATGACCCTGGTCCAAGCTATGGTGGCACGCGTCCGGCTTCCAAAGGTAATAACGATT
CATTTAATGACCCCTTCGCCGATTCTGGAAAGCCGATTAACATCTCAGATGATGATCTGCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.594
  ssb Latilactobacillus sakei subsp. sakei 23K

47.647

100

0.523
  ssb Vibrio cholerae strain A1552

34.637

100

0.4
  ssb Glaesserella parasuis strain SC1401

33.708

100

0.387
  ssb Neisseria meningitidis MC58

33.721

100

0.374
  ssb Neisseria gonorrhoeae MS11

33.721

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.369

66.452

0.361

Multiple sequence alignment