Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GYK50_RS12400 | Genome accession | NZ_CP048752 |
| Coordinates | 2926062..2927285 (+) | Length | 407 a.a. |
| NCBI ID | WP_093069696.1 | Uniprot ID | - |
| Organism | Psychrobacter pacificensis strain WSY-P01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2921062..2932285
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYK50_RS12385 (GYK50_12385) | secG | 2921842..2922150 (-) | 309 | WP_021814138.1 | preprotein translocase subunit SecG | - |
| GYK50_RS12390 (GYK50_12390) | tpiA | 2922366..2923178 (-) | 813 | WP_093069701.1 | triose-phosphate isomerase | - |
| GYK50_RS12395 (GYK50_12395) | pilB | 2923846..2925561 (+) | 1716 | WP_093069698.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GYK50_RS12400 (GYK50_12400) | pilC | 2926062..2927285 (+) | 1224 | WP_093069696.1 | type II secretion system F family protein | Machinery gene |
| GYK50_RS12405 (GYK50_12405) | pilD | 2927293..2928195 (+) | 903 | WP_093069694.1 | A24 family peptidase | Machinery gene |
| GYK50_RS12410 (GYK50_12410) | coaE | 2928299..2928985 (+) | 687 | WP_212564039.1 | dephospho-CoA kinase | - |
| GYK50_RS12415 (GYK50_12415) | rlmB | 2928948..2929718 (-) | 771 | WP_093069689.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| GYK50_RS12420 (GYK50_12420) | - | 2929965..2930300 (-) | 336 | WP_058023616.1 | pyrimidine/purine nucleoside phosphorylase | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44671.68 Da Isoelectric Point: 9.7648
>NTDB_id=422633 GYK50_RS12400 WP_093069696.1 2926062..2927285(+) (pilC) [Psychrobacter pacificensis strain WSY-P01]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKPIKAIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRKHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAIKYPIAVIVVAIIVTMILLIKVVPVFSDLFESFGAELPAFTQMVVGMSEWMKAWWFILIIFIGGAIIGF
SEAKKRSKKFRDFLDRAVLKAPIFGNIAYQAIIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQVKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKPIKAIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRKHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAIKYPIAVIVVAIIVTMILLIKVVPVFSDLFESFGAELPAFTQMVVGMSEWMKAWWFILIIFIGGAIIGF
SEAKKRSKKFRDFLDRAVLKAPIFGNIAYQAIIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQVKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
Nucleotide
Download Length: 1224 bp
>NTDB_id=422633 GYK50_RS12400 WP_093069696.1 2926062..2927285(+) (pilC) [Psychrobacter pacificensis strain WSY-P01]
ATGGCAAAAGCTAAGACTGACATGCTGTTGGACTTTGTCTATGATGGCGTAAACCGGCGCGGGCAAAAGGTGAAAGGCGA
AACCACTAGTCGTAGCTTAGAGTTAGCCAAAGCTACTTTACGCAAGCAAGGGATCACGGTTAAAGGTATCAAGAAGAAAC
CAAAACCGCTCTACACCTTCAAAAAACCAATTAAAGCCATTGATATTGCGATTTTTGCGCGACAATTGGCAACGATGATG
AAAGCAGGTGTCCCGCTGACTCAATCTTTTGAAATTGTAGCAGATTCGCTTGATAATCCGAGTATGAAAGACTTGGTGCT
ACAAATCAAAGCTGATATCGAAGCAGGTGGCACCTTTGCTTCCGCCCTACGTAAACACCCTCGTTACTTTGATGATCTAT
TCTGCTCACTCGTCGAATCTGGTGAACAATCGGGTGCGCTAGAGACCATGCTTGAGCGTGTAGCGACTTACAAAGAAAAA
AGCGAATTACTAAAAGCAAAGATTAAGAAAGCAATAAAATATCCGATTGCTGTCATCGTAGTTGCCATTATCGTTACTAT
GATTCTATTAATAAAAGTCGTGCCTGTATTTTCAGACCTATTTGAGTCATTTGGCGCAGAGCTACCTGCTTTTACTCAAA
TGGTAGTGGGTATGTCTGAGTGGATGAAAGCATGGTGGTTTATTTTAATTATTTTTATCGGTGGGGCTATTATCGGATTT
TCAGAAGCAAAAAAACGCTCTAAAAAATTCCGTGACTTTTTAGACCGTGCGGTATTAAAAGCACCAATTTTTGGCAATAT
TGCTTATCAAGCAATTATTGCGCGCTTTGCTCGTACCCTATCTACCACTTTTGCCGCTGGTGTACCTCTCATTGATGCGC
TAGATTCTACTGCTGGTGCGACCAACAATGTCGTGTTTTATAATGCCACTCAACAGGTCAAAAATGACGTTTCTACTGGT
CAGCAACTACAGTTCTCCATACGTTCAACCAATTTATTCCCAAGTCTCGTTATTCAAATGGTGGGTATCGGCGAAGAGTC
TGGTAGCTTGGAAGAAATGCTCGATAAAGTCGCTGTCTACTACGAAAACGAAGTCGACAATGCCGTTGATGGTTTGACCA
GCTTAATGGAACCTATGATCATGGCTGTACTGGGTGTATTAGTTGGTGGTCTGGTCATTGCGATGTACTTACCAATCTTC
CAAATGGGCTCAGTCGTAGGATAA
ATGGCAAAAGCTAAGACTGACATGCTGTTGGACTTTGTCTATGATGGCGTAAACCGGCGCGGGCAAAAGGTGAAAGGCGA
AACCACTAGTCGTAGCTTAGAGTTAGCCAAAGCTACTTTACGCAAGCAAGGGATCACGGTTAAAGGTATCAAGAAGAAAC
CAAAACCGCTCTACACCTTCAAAAAACCAATTAAAGCCATTGATATTGCGATTTTTGCGCGACAATTGGCAACGATGATG
AAAGCAGGTGTCCCGCTGACTCAATCTTTTGAAATTGTAGCAGATTCGCTTGATAATCCGAGTATGAAAGACTTGGTGCT
ACAAATCAAAGCTGATATCGAAGCAGGTGGCACCTTTGCTTCCGCCCTACGTAAACACCCTCGTTACTTTGATGATCTAT
TCTGCTCACTCGTCGAATCTGGTGAACAATCGGGTGCGCTAGAGACCATGCTTGAGCGTGTAGCGACTTACAAAGAAAAA
AGCGAATTACTAAAAGCAAAGATTAAGAAAGCAATAAAATATCCGATTGCTGTCATCGTAGTTGCCATTATCGTTACTAT
GATTCTATTAATAAAAGTCGTGCCTGTATTTTCAGACCTATTTGAGTCATTTGGCGCAGAGCTACCTGCTTTTACTCAAA
TGGTAGTGGGTATGTCTGAGTGGATGAAAGCATGGTGGTTTATTTTAATTATTTTTATCGGTGGGGCTATTATCGGATTT
TCAGAAGCAAAAAAACGCTCTAAAAAATTCCGTGACTTTTTAGACCGTGCGGTATTAAAAGCACCAATTTTTGGCAATAT
TGCTTATCAAGCAATTATTGCGCGCTTTGCTCGTACCCTATCTACCACTTTTGCCGCTGGTGTACCTCTCATTGATGCGC
TAGATTCTACTGCTGGTGCGACCAACAATGTCGTGTTTTATAATGCCACTCAACAGGTCAAAAATGACGTTTCTACTGGT
CAGCAACTACAGTTCTCCATACGTTCAACCAATTTATTCCCAAGTCTCGTTATTCAAATGGTGGGTATCGGCGAAGAGTC
TGGTAGCTTGGAAGAAATGCTCGATAAAGTCGCTGTCTACTACGAAAACGAAGTCGACAATGCCGTTGATGGTTTGACCA
GCTTAATGGAACCTATGATCATGGCTGTACTGGGTGTATTAGTTGGTGGTCTGGTCATTGCGATGTACTTACCAATCTTC
CAAATGGGCTCAGTCGTAGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
69.853 |
100 |
0.7 |
| pilC | Acinetobacter baylyi ADP1 |
68.382 |
100 |
0.686 |
| pilC | Pseudomonas stutzeri DSM 10701 |
64.051 |
97.052 |
0.622 |
| pilC | Legionella pneumophila strain ERS1305867 |
56.642 |
98.034 |
0.555 |
| pilC | Vibrio cholerae strain A1552 |
43.627 |
100 |
0.437 |
| pilG | Neisseria gonorrhoeae MS11 |
43.687 |
97.297 |
0.425 |
| pilG | Neisseria meningitidis 44/76-A |
43.434 |
97.297 |
0.423 |
| pilC | Vibrio campbellii strain DS40M4 |
41.646 |
98.526 |
0.41 |