Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GYK50_RS11275 | Genome accession | NZ_CP048752 |
| Coordinates | 2670122..2670610 (-) | Length | 162 a.a. |
| NCBI ID | WP_212563960.1 | Uniprot ID | - |
| Organism | Psychrobacter pacificensis strain WSY-P01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 2668147..2669234 | 2670122..2670610 | flank | 888 |
Gene organization within MGE regions
Location: 2668147..2670610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYK50_RS11265 (GYK50_11265) | - | 2668147..2669234 (+) | 1088 | WP_212563958.1 | IS3 family transposase | - |
| GYK50_RS11270 (GYK50_11270) | - | 2669293..2670027 (-) | 735 | WP_212563959.1 | type IV pilin accessory protein | - |
| GYK50_RS11275 (GYK50_11275) | pilA | 2670122..2670610 (-) | 489 | WP_212563960.1 | pilin | Machinery gene |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 16540.83 Da Isoelectric Point: 8.4426
>NTDB_id=422631 GYK50_RS11275 WP_212563960.1 2670122..2670610(-) (pilA) [Psychrobacter pacificensis strain WSY-P01]
MNAQKGFTLIELMIVIAIIGILAAVALPAYQDYTKRAKVSEGLSLASSAKTSVTENASNAAKYSLGWTAPSATVNVKSVG
ITDTNGEVTISYDTPVAAAKANTLILVPYTGPNTKPVALPDSTSAYTPPSGNISWACKAAGSSFTIGTAGTLPSELAPSN
CR
MNAQKGFTLIELMIVIAIIGILAAVALPAYQDYTKRAKVSEGLSLASSAKTSVTENASNAAKYSLGWTAPSATVNVKSVG
ITDTNGEVTISYDTPVAAAKANTLILVPYTGPNTKPVALPDSTSAYTPPSGNISWACKAAGSSFTIGTAGTLPSELAPSN
CR
Nucleotide
Download Length: 489 bp
>NTDB_id=422631 GYK50_RS11275 WP_212563960.1 2670122..2670610(-) (pilA) [Psychrobacter pacificensis strain WSY-P01]
ATGAACGCTCAAAAAGGTTTTACACTAATCGAACTAATGATCGTTATCGCCATTATCGGTATCTTGGCGGCGGTTGCTCT
ACCTGCTTATCAGGATTACACTAAACGTGCTAAAGTTTCGGAAGGCTTATCACTGGCCTCGTCAGCTAAAACATCAGTTA
CAGAAAATGCGTCGAATGCAGCTAAGTATAGCTTAGGCTGGACAGCTCCTTCTGCAACTGTAAACGTTAAAAGTGTGGGT
ATTACAGATACTAATGGTGAGGTCACGATTTCTTATGATACTCCTGTAGCTGCGGCTAAAGCTAATACATTGATATTAGT
ACCATATACTGGCCCTAATACTAAGCCTGTAGCCTTACCTGACTCTACAAGTGCATATACTCCACCTTCAGGTAATATTA
GCTGGGCTTGTAAAGCAGCTGGTAGTTCTTTTACTATTGGAACAGCAGGGACCTTACCTTCTGAGTTAGCACCAAGTAAC
TGTCGTTAA
ATGAACGCTCAAAAAGGTTTTACACTAATCGAACTAATGATCGTTATCGCCATTATCGGTATCTTGGCGGCGGTTGCTCT
ACCTGCTTATCAGGATTACACTAAACGTGCTAAAGTTTCGGAAGGCTTATCACTGGCCTCGTCAGCTAAAACATCAGTTA
CAGAAAATGCGTCGAATGCAGCTAAGTATAGCTTAGGCTGGACAGCTCCTTCTGCAACTGTAAACGTTAAAAGTGTGGGT
ATTACAGATACTAATGGTGAGGTCACGATTTCTTATGATACTCCTGTAGCTGCGGCTAAAGCTAATACATTGATATTAGT
ACCATATACTGGCCCTAATACTAAGCCTGTAGCCTTACCTGACTCTACAAGTGCATATACTCCACCTTCAGGTAATATTA
GCTGGGCTTGTAAAGCAGCTGGTAGTTCTTTTACTATTGGAACAGCAGGGACCTTACCTTCTGAGTTAGCACCAAGTAAC
TGTCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
49.405 |
100 |
0.512 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.691 |
100 |
0.475 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
45.122 |
100 |
0.457 |
| pilA2 | Legionella pneumophila str. Paris |
44.512 |
100 |
0.451 |
| comP | Acinetobacter baylyi ADP1 |
42.683 |
100 |
0.432 |
| pilA | Acinetobacter baumannii strain A118 |
37.059 |
100 |
0.389 |