Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G3U99_RS03920 Genome accession   NZ_CP048693
Coordinates   834393..835508 (-) Length   371 a.a.
NCBI ID   WP_021456917.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 829393..840508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS03890 (G3U99_03880) hemF 829945..830862 (-) 918 WP_021458651.1 oxygen-dependent coproporphyrinogen oxidase -
  G3U99_RS03895 (G3U99_03885) - 830884..831441 (-) 558 WP_021458650.1 L-threonylcarbamoyladenylate synthase -
  G3U99_RS03900 (G3U99_03890) purE 831638..832123 (+) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  G3U99_RS03905 (G3U99_03895) - 832128..833261 (+) 1134 WP_021458649.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  G3U99_RS03910 (G3U99_03900) - 833311..833895 (-) 585 WP_021458648.1 type I DNA topoisomerase -
  G3U99_RS03915 (G3U99_03905) - 833911..834390 (-) 480 WP_006957516.1 DUF494 family protein -
  G3U99_RS03920 (G3U99_03910) dprA 834393..835508 (-) 1116 WP_021456917.1 DNA-processing protein DprA Machinery gene
  G3U99_RS03925 (G3U99_03915) def 835759..836280 (+) 522 WP_006957514.1 peptide deformylase -
  G3U99_RS03930 (G3U99_03920) fmt 836303..837250 (+) 948 WP_021456915.1 methionyl-tRNA formyltransferase -
  G3U99_RS03935 (G3U99_03925) rsmB 837307..838587 (+) 1281 WP_021456914.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  G3U99_RS03940 (G3U99_03930) trkA 838637..840013 (+) 1377 WP_006957511.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40272.11 Da        Isoelectric Point: 6.5841

>NTDB_id=422386 G3U99_RS03920 WP_021456917.1 834393..835508(-) (dprA) [Vibrio coralliilyticus OCN008]
MTKEELTAWLSLYFTPRIGPKTFQRLVAVDSPINIIDSSPETLRRLGFSDSQLDYLLHRAAEDIEACFEWQAASSARTIL
ALSDYGYPALLKQADAAPATLFVEGQLESLSRPQMAIVGSRNASIDGLNTARSFATQLVKQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNSMYPARHKKLAQRIVQQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDVNKPPVQSDLIEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=422386 G3U99_RS03920 WP_021456917.1 834393..835508(-) (dprA) [Vibrio coralliilyticus OCN008]
ATGACGAAAGAAGAACTGACGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGGCCCAAAACGTTTCAGCGTTTGGT
GGCGGTAGATTCTCCAATCAACATCATTGACTCTTCACCCGAGACATTACGCCGCTTAGGCTTTTCCGACTCGCAACTGG
ACTATCTCCTACACCGAGCTGCCGAGGATATTGAGGCGTGTTTCGAGTGGCAAGCAGCGTCCAGTGCCAGAACCATTCTA
GCTTTGAGTGACTATGGTTATCCGGCACTGTTGAAACAGGCTGACGCTGCGCCAGCAACGCTGTTTGTTGAAGGTCAGCT
AGAGAGTCTATCTCGGCCACAAATGGCGATTGTGGGCAGTCGCAATGCCAGTATTGATGGGCTTAACACTGCACGCAGCT
TTGCGACCCAGCTGGTGAAGCAAGACATGGTCGTGACCAGCGGCTTGGCGCTAGGCGTTGATGGTTATGCCCATGATGGG
GCACTCAATGGCAATGGGCAAACCATCGCCGTGCTCGGTTGTGGCTTAAATTCTATGTATCCGGCACGGCATAAGAAGTT
AGCTCAACGAATCGTTCAACAAGGGGCATTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGCGGCCTGTCACTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGCGGCTCTCTGATCACC
GCTCGCTATGCGATGGAGCAAGGTCGAGAAGTGTTTGCGATTCCCGGCTCGATTCATCATCCCCATGCGAGAGGTTGTAA
CCTGTTGATAAAACAGGGTGCGTGTCTGGTTCAGCAGGTTTCTGACATAACCGATGAAATTGACAGTCTGATTCGCTGGT
CTGATGTTAATAAGCCGCCAGTGCAAAGCGATCTAATTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.398

98.922

0.617
  dprA Vibrio cholerae strain A1552

57.682

100

0.577
  dprA Glaesserella parasuis strain SC1401

45.213

100

0.458
  dprA Legionella pneumophila strain ERS1305867

43.251

97.844

0.423
  dprA Neisseria meningitidis strain C311

37.343

100

0.402
  dprA Neisseria meningitidis MC58

37.343

100

0.402
  dprA Haemophilus influenzae Rd KW20

41.691

92.453

0.385

Multiple sequence alignment