Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G0029_RS14240 Genome accession   NZ_CP048670
Coordinates   2926480..2928594 (-) Length   704 a.a.
NCBI ID   WP_180106974.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2921480..2933594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14225 (G0029_14210) - 2923954..2924793 (-) 840 WP_180109848.1 hypothetical protein -
  G0029_RS14230 (G0029_14215) aroB 2924801..2925883 (-) 1083 WP_180106823.1 3-dehydroquinate synthase -
  G0029_RS14235 (G0029_14220) aroK 2925898..2926443 (-) 546 WP_078189378.1 shikimate kinase AroK -
  G0029_RS14240 (G0029_14225) pilQ 2926480..2928594 (-) 2115 WP_180106974.1 type IV pilus secretin PilQ Machinery gene
  G0029_RS14245 (G0029_14230) pilP 2928656..2929183 (-) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  G0029_RS14250 (G0029_14235) pilO 2929180..2929902 (-) 723 WP_180106821.1 type 4a pilus biogenesis protein PilO Machinery gene
  G0029_RS14255 (G0029_14240) pilN 2929899..2930585 (-) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  G0029_RS14260 (G0029_14245) comM 2930585..2931643 (-) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76615.66 Da        Isoelectric Point: 6.2157

>NTDB_id=422205 G0029_RS14240 WP_180106974.1 2926480..2928594(-) (pilQ) [Acinetobacter sp. YH12138 strain YH12138_T]
MNHVFRQFSMGAVAMAMMQVANAQVSVTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLDQPSRLVLDFDKAQQNLKQSSI
PVATAEASTVDVSSDAQRARLTVNLANAGAFTTRVEGNTFILKINSAQAANYVQPVAQRQQQGISNIGFHRGSNGEGQVV
VDLLGGNTPVDVQQQGSKVVIRTLGNKVPAHLTRRLNVNDFATPVATVDAHNDGGNGVITIQSTGSYEYMAYQTDNKLTV
SLKRPEDKNPLRPKAANHYIGKKISLDFQDIEVRRVLQLLADFTEINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKALRQSMKLAPLQTEYLTLSYAKAAEIEKLITQSKTAGNSGSSNNSNNADDDRGN
LLSPRGTISADTRTNTLIINDTAQNIDQIRKMVDLLDVSVKQVMVEARIVKASTDFTKEMGVKWGLLSQGINQNDHLLVG
GSDTTLWDLKTPDDDGKYTIQRPSNLNVDLGVTTAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTADKQP
AKVASGQEIPYQTTTGTGSNATSSTEFKEALLSLDVTPSITPDGKVQMKLNIKSDSPAGYAQNGEIILNKNEINTDVLVN
NGETVVLGGIFNQETQSKQTKVPFLGDIPYVGRLFRKDMKSDAKNELLIFVTPRIVNDSVTRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=422205 G0029_RS14240 WP_180106974.1 2926480..2928594(-) (pilQ) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGAATCATGTGTTTCGTCAGTTTTCGATGGGGGCTGTTGCAATGGCGATGATGCAAGTTGCCAATGCTCAGGTGAGTGT
AACCAATGTGGTACCAATGCAAATTCCAGGTCAAGGGACTGAAATTCGCGTGATGTTTAATGGCTTGCCGCCGCAACCAC
AAGCTTATCAACTCGATCAACCATCACGACTAGTTTTAGACTTTGATAAAGCACAGCAAAATTTAAAACAAAGTTCAATT
CCTGTTGCAACGGCTGAAGCGAGCACTGTGGATGTGAGTTCGGATGCGCAACGTGCGCGCTTAACTGTGAATTTAGCCAA
TGCTGGCGCTTTTACCACGCGTGTTGAAGGTAATACCTTTATTTTAAAAATCAACTCTGCACAAGCTGCAAATTATGTAC
AGCCTGTAGCACAACGTCAGCAACAGGGCATCTCAAATATTGGTTTCCACCGTGGTTCTAATGGTGAAGGTCAAGTTGTT
GTTGATTTATTGGGTGGAAATACCCCCGTTGATGTTCAACAGCAAGGCAGTAAAGTGGTGATCCGTACTTTAGGCAATAA
AGTACCTGCACATTTGACTCGCCGTTTAAATGTCAATGATTTTGCAACACCTGTTGCAACGGTAGATGCACATAATGATG
GCGGTAATGGTGTGATTACCATTCAGTCGACGGGCAGCTATGAATATATGGCGTACCAAACTGATAATAAATTAACGGTA
AGTTTGAAACGTCCGGAAGATAAGAATCCATTACGTCCTAAAGCTGCCAATCATTATATCGGTAAGAAGATTTCATTAGA
CTTCCAAGATATTGAAGTACGTCGTGTACTGCAACTTTTGGCTGATTTCACTGAAATCAATATGGTTGCTGCTGATACGG
TTCAAGGAAATATTACACTTCGCTTAAAAGATGTGCCTTGGGATCAAGCACTAGATATCATATTGAAAACCAAGAATTTG
GACAAACGTCGTAATGGTAATGTGATTTGGATTGCGCCTGTATCTGAGTTGATTAAAGCGGAAGAAGAAGAAGCAAAAGC
CTTACGTCAAAGTATGAAGTTGGCACCATTACAGACTGAATATTTAACGTTAAGCTATGCAAAAGCTGCTGAGATAGAGA
AGCTGATTACGCAGTCTAAAACTGCGGGTAATAGCGGTTCGTCAAATAATAGTAATAATGCTGATGATGATCGGGGTAAT
TTGTTAAGTCCACGCGGAACGATTTCTGCAGATACGCGTACAAATACACTGATTATTAATGATACTGCGCAAAACATTGA
TCAGATTCGTAAGATGGTGGATTTGCTTGATGTATCAGTCAAGCAGGTCATGGTCGAAGCACGTATTGTAAAAGCATCTA
CTGACTTTACCAAAGAAATGGGTGTGAAATGGGGTCTCTTGTCTCAAGGGATTAACCAAAATGACCATTTATTGGTGGGT
GGTAGTGATACTACGCTTTGGGACTTAAAAACGCCGGATGATGATGGGAAATATACGATTCAACGTCCAAGTAACTTAAA
CGTGGACTTAGGGGTGACTACTGCAGGTGCCAGTCGAATTGCGTTTGGCTTAATTAGTCTTTCTGATTTTATGTTGGATT
TAGAGCTTTCTGCTTTACAAGCGGATGGTTATGGTGAAGTCATTTCTACACCAAAAGTACTGACAGCGGATAAACAACCC
GCCAAAGTTGCATCAGGTCAAGAAATTCCGTATCAAACCACAACGGGTACAGGTTCAAATGCGACTTCTTCTACCGAGTT
TAAAGAAGCTTTATTAAGTTTGGATGTCACGCCTAGCATTACTCCAGATGGTAAAGTGCAAATGAAGCTGAATATCAAGA
GCGACTCACCAGCAGGATATGCACAAAATGGTGAAATCATCCTGAATAAAAATGAAATTAATACCGATGTCTTAGTCAAC
AATGGTGAAACTGTTGTGCTCGGCGGTATTTTTAATCAGGAAACGCAAAGTAAGCAAACTAAAGTACCGTTCTTAGGTGA
TATTCCTTATGTGGGTCGCTTATTCCGTAAAGATATGAAAAGCGATGCAAAAAATGAGTTGCTGATTTTTGTTACTCCGC
GAATTGTTAATGACAGTGTTACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(40-122)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.931

100

0.768
  pilQ Acinetobacter baumannii strain A118

74.792

100

0.767
  comQ Acinetobacter baylyi ADP1

74.017

100

0.749
  pilQ Pseudomonas aeruginosa PAK

41.536

99.858

0.415

Multiple sequence alignment