Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   G0029_RS14250 Genome accession   NZ_CP048670
Coordinates   2929180..2929902 (-) Length   240 a.a.
NCBI ID   WP_180106821.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2924180..2934902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14230 (G0029_14215) aroB 2924801..2925883 (-) 1083 WP_180106823.1 3-dehydroquinate synthase -
  G0029_RS14235 (G0029_14220) aroK 2925898..2926443 (-) 546 WP_078189378.1 shikimate kinase AroK -
  G0029_RS14240 (G0029_14225) pilQ 2926480..2928594 (-) 2115 WP_180106974.1 type IV pilus secretin PilQ Machinery gene
  G0029_RS14245 (G0029_14230) pilP 2928656..2929183 (-) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  G0029_RS14250 (G0029_14235) pilO 2929180..2929902 (-) 723 WP_180106821.1 type 4a pilus biogenesis protein PilO Machinery gene
  G0029_RS14255 (G0029_14240) pilN 2929899..2930585 (-) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  G0029_RS14260 (G0029_14245) comM 2930585..2931643 (-) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  G0029_RS14265 (G0029_14250) ponA 2931809..2934349 (+) 2541 WP_180106819.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27252.92 Da        Isoelectric Point: 4.8866

>NTDB_id=422207 G0029_RS14250 WP_180106821.1 2929180..2929902(-) (pilO) [Acinetobacter sp. YH12138 strain YH12138_T]
MSRDEFEQLNQDAVVIPKKKMTFDKFVQQFNTLDPNNYGSWPISVKITCWIFIIILVAILGYFLAIKGKIEAISSANAQE
QNLLNEFREKDSKLRNLQQYQLQLQDMEARFNQQLEQLPKETEIPDLVDDINITGVNSGLKFKIIRLEPEVKQEFFTEQP
IHIEATGDYHAFGSFVSGIAGLSRIVTLHNLTITATENKEKNSDIPKIDYVISAKTYRYEGNTESAAKAADSASTQEAPK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=422207 G0029_RS14250 WP_180106821.1 2929180..2929902(-) (pilO) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGAGTCGTGATGAATTTGAACAATTGAATCAAGATGCTGTGGTCATTCCGAAAAAGAAAATGACTTTTGATAAGTTTGT
ACAGCAGTTCAATACGCTAGATCCGAATAACTATGGTAGTTGGCCAATTTCAGTCAAAATTACATGTTGGATTTTTATCA
TTATCCTTGTGGCAATTTTGGGCTATTTCTTGGCGATTAAAGGCAAGATTGAAGCTATTTCAAGTGCCAATGCGCAAGAA
CAAAATTTGTTAAATGAGTTTCGTGAAAAAGATTCAAAACTACGTAATTTGCAACAATATCAGCTGCAGTTGCAGGATAT
GGAAGCACGTTTTAATCAACAATTAGAACAATTGCCGAAAGAAACTGAAATTCCAGATTTAGTTGATGATATTAATATAA
CTGGTGTGAATTCTGGACTGAAATTTAAAATTATTCGCCTTGAGCCTGAAGTGAAGCAAGAGTTCTTTACGGAACAGCCA
ATTCATATTGAGGCAACAGGTGATTACCACGCCTTTGGTTCATTTGTAAGTGGTATTGCGGGGCTCTCACGGATTGTGAC
TTTGCATAATTTAACGATTACAGCAACTGAAAATAAAGAAAAGAACTCAGATATTCCAAAAATTGACTATGTGATTTCTG
CAAAAACATATCGTTATGAAGGGAATACTGAAAGTGCTGCGAAAGCTGCAGATTCAGCAAGCACACAGGAGGCTCCAAAA
TGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

67.364

99.583

0.671
  comO Acinetobacter baylyi ADP1

64.681

97.917

0.633

Multiple sequence alignment