Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   G0029_RS14255 Genome accession   NZ_CP048670
Coordinates   2929899..2930585 (-) Length   228 a.a.
NCBI ID   WP_078189382.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2924899..2935585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14235 (G0029_14220) aroK 2925898..2926443 (-) 546 WP_078189378.1 shikimate kinase AroK -
  G0029_RS14240 (G0029_14225) pilQ 2926480..2928594 (-) 2115 WP_180106974.1 type IV pilus secretin PilQ Machinery gene
  G0029_RS14245 (G0029_14230) pilP 2928656..2929183 (-) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  G0029_RS14250 (G0029_14235) pilO 2929180..2929902 (-) 723 WP_180106821.1 type 4a pilus biogenesis protein PilO Machinery gene
  G0029_RS14255 (G0029_14240) pilN 2929899..2930585 (-) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  G0029_RS14260 (G0029_14245) comM 2930585..2931643 (-) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  G0029_RS14265 (G0029_14250) ponA 2931809..2934349 (+) 2541 WP_180106819.1 penicillin-binding protein PBP1a -
  G0029_RS14270 (G0029_14255) - 2934406..2935209 (-) 804 WP_180106972.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25390.94 Da        Isoelectric Point: 5.7844

>NTDB_id=422208 G0029_RS14255 WP_078189382.1 2929899..2930585(-) (pilN) [Acinetobacter sp. YH12138 strain YH12138_T]
MAKINLLPWRDELREKRKKEFIALCIGAFLIGVIGVGLTWLYFDHKLKDQEQANQLIISHNQNLDVQLKSLDGLQEQRNA
IIERMKLIQGLQGQRPIAVHLVDELVRVTPANMYITKFERNGDKFMIEGRAESPNTVADLLRNLEASPWYRNAFMSSFLV
AEEKKDKAPTSVVPRVEESYGAFTVTADLEQIAQPTINDPAANAGQSASSAQTSDAQTAATPTPEAAK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=422208 G0029_RS14255 WP_078189382.1 2929899..2930585(-) (pilN) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGGCAAAAATTAACTTGCTCCCTTGGCGTGATGAGCTAAGAGAGAAACGAAAAAAAGAATTTATTGCACTTTGTATTGG
GGCTTTCTTAATTGGGGTAATTGGGGTTGGTTTAACATGGTTGTACTTTGATCACAAATTAAAAGATCAAGAACAAGCGA
ACCAATTGATTATCAGTCATAACCAAAACTTAGATGTTCAATTAAAGTCTTTGGATGGTTTACAAGAACAGCGTAATGCC
ATTATTGAACGAATGAAGTTGATTCAAGGCTTACAAGGTCAACGTCCAATCGCTGTACATCTTGTAGATGAATTGGTTCG
TGTGACACCTGCCAATATGTACATCACAAAATTTGAACGTAATGGCGACAAATTTATGATCGAAGGGCGTGCGGAAAGTC
CAAACACTGTTGCAGATCTACTGCGTAATTTGGAAGCATCACCTTGGTATCGTAATGCCTTCATGAGCTCATTCCTTGTG
GCGGAAGAGAAAAAAGACAAAGCACCGACGTCAGTGGTTCCTCGCGTAGAAGAATCTTATGGTGCATTTACTGTGACTGC
TGATTTGGAGCAAATTGCGCAGCCGACCATTAATGATCCAGCAGCAAATGCAGGACAGTCAGCTTCATCGGCGCAAACAT
CTGACGCACAAACTGCAGCAACACCAACTCCGGAGGCTGCAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.014

93.421

0.645
  comN Acinetobacter baylyi ADP1

71.503

84.649

0.605

Multiple sequence alignment