Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   G0028_RS01430 Genome accession   NZ_CP048659
Coordinates   293612..294670 (+) Length   352 a.a.
NCBI ID   WP_130074425.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 288612..299670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS01420 (G0028_01420) - 288844..290433 (+) 1590 WP_180044976.1 TerC family protein -
  G0028_RS01425 (G0028_01425) ponA 290877..293450 (-) 2574 WP_174493486.1 penicillin-binding protein PBP1a -
  G0028_RS01430 (G0028_01430) pilM 293612..294670 (+) 1059 WP_130074425.1 pilus assembly protein PilM Machinery gene
  G0028_RS01435 (G0028_01435) pilN 294670..295302 (+) 633 WP_130074426.1 PilN domain-containing protein Machinery gene
  G0028_RS01440 (G0028_01440) - 295299..295962 (+) 664 Protein_278 type 4a pilus biogenesis protein PilO -
  G0028_RS01445 (G0028_01445) pilP 296108..296635 (+) 528 WP_130074428.1 pilus assembly protein PilP Machinery gene
  G0028_RS01450 (G0028_01450) pilQ 296652..298817 (+) 2166 WP_180044974.1 type IV pilus secretin PilQ family protein Machinery gene
  G0028_RS01455 (G0028_01455) aroK 298854..299396 (+) 543 WP_130074430.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38999.65 Da        Isoelectric Point: 4.4486

>NTDB_id=422147 G0028_RS01430 WP_130074425.1 293612..294670(+) (pilM) [Acinetobacter piscicola strain YH12207_T]
MLRISRKQVKGLIGVDISSTSVKILELSVKNGRYWVESYGLSPLLDGSVVEKNILNPEAVSDALERAMNIANPQSTNAAV
AVTNSMVIQKVIEMDADMNDEEREVQIRMDAEQYIPFPLDEVSLDFEVLPDKLPNPNRVNVLLVATRTENVDSRVEVLEI
TGLTAKVVDTESYCMERAFEVFADTLPIGANMVGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTQDVQARYGLSYEE
AGRAKKDRSLPDDYETEVLIPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTVANPFL
QMGFSPQIDLKKIENDAPSLMVACGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=422147 G0028_RS01430 WP_130074425.1 293612..294670(+) (pilM) [Acinetobacter piscicola strain YH12207_T]
GTGCTTAGAATAAGTCGTAAGCAAGTTAAGGGGCTTATAGGGGTAGATATCAGTTCAACCTCTGTAAAGATATTAGAACT
CTCTGTTAAAAACGGTCGTTATTGGGTGGAAAGCTATGGATTAAGTCCATTGTTAGATGGAAGTGTGGTTGAGAAGAATA
TTCTCAACCCAGAAGCAGTTTCGGATGCTTTAGAGCGTGCGATGAATATTGCCAATCCTCAATCCACGAATGCGGCTGTA
GCAGTGACTAACTCTATGGTGATTCAAAAAGTCATTGAAATGGATGCAGACATGAACGATGAAGAACGCGAAGTTCAAAT
TCGTATGGATGCAGAGCAATATATTCCATTCCCATTAGATGAAGTCAGTCTAGACTTTGAGGTTTTACCTGACAAGTTAC
CTAACCCAAATCGGGTGAATGTATTGCTTGTTGCAACACGTACTGAAAATGTCGACTCGCGCGTTGAAGTACTTGAGATT
ACTGGATTGACTGCAAAAGTGGTTGATACAGAGAGCTATTGCATGGAGCGTGCCTTTGAAGTATTCGCGGATACTTTACC
TATTGGCGCGAATATGGTCGGGATCTTAGATATCGGGCATACCATGACTACACTGTCTGTCATGCAAAACGGTAAAATTA
TCTATACGCGTGAACAAGTCTTTGGGGGGAAACAGCTGACCCAAGATGTACAAGCGCGTTATGGTCTTTCTTATGAAGAA
GCGGGCCGTGCCAAAAAAGATCGCTCATTGCCTGATGACTATGAAACAGAAGTGTTGATTCCATTTTTGGAAGCTGTTGT
TCAACAAGCAGCACGCTCATTACAATTCTTTTTCTCATCCTCTCAATTTAATGAAATTGATCATATTTTATTGGCTGGAG
GCAATGCCAATATTCCAGGACTTGCGAAATTATTACAACAAAAATTGGGTTATCGAGTCACTGTGGCAAATCCTTTCTTA
CAAATGGGTTTTTCACCACAAATCGATTTGAAAAAAATAGAAAATGATGCACCTTCCTTAATGGTCGCATGTGGCTTAGC
AATGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

82.955

100

0.83
  comM Acinetobacter nosocomialis M2

82.955

100

0.83
  comM Acinetobacter baylyi ADP1

79.261

100

0.793
  pilM Legionella pneumophila strain ERS1305867

41.69

100

0.42

Multiple sequence alignment