Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G0028_RS01450 Genome accession   NZ_CP048659
Coordinates   296652..298817 (+) Length   721 a.a.
NCBI ID   WP_180044974.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 291652..303817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS01430 (G0028_01430) pilM 293612..294670 (+) 1059 WP_130074425.1 pilus assembly protein PilM Machinery gene
  G0028_RS01435 (G0028_01435) pilN 294670..295302 (+) 633 WP_130074426.1 PilN domain-containing protein Machinery gene
  G0028_RS01440 (G0028_01440) - 295299..295962 (+) 664 Protein_278 type 4a pilus biogenesis protein PilO -
  G0028_RS01445 (G0028_01445) pilP 296108..296635 (+) 528 WP_130074428.1 pilus assembly protein PilP Machinery gene
  G0028_RS01450 (G0028_01450) pilQ 296652..298817 (+) 2166 WP_180044974.1 type IV pilus secretin PilQ family protein Machinery gene
  G0028_RS01455 (G0028_01455) aroK 298854..299396 (+) 543 WP_130074430.1 shikimate kinase AroK -
  G0028_RS01460 (G0028_01460) aroB 299422..300501 (+) 1080 WP_130074431.1 3-dehydroquinate synthase -
  G0028_RS01465 (G0028_01465) - 300515..301384 (+) 870 WP_174493483.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78239.50 Da        Isoelectric Point: 5.7171

>NTDB_id=422150 G0028_RS01450 WP_180044974.1 296652..298817(+) (pilQ) [Acinetobacter piscicola strain YH12207_T]
MKNSIKNFWGGDGIFMNTYLRQFSMAAVSIAVMQAAAAQVTMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLV
LDFNDTKQGLTQAAIPVSTSEASAVNVASDAQRSRLTVNLNNKSTFTTRVEGNTFILKINSANQSNTLENFAPATAKSAQ
GVSDIGFQRGSKGEGQVSINLAGVNTPVDVQQQGSKVVVRVLGNKIPTHLIRRLNVNDFATPVATIDAHNDGNNGVITIQ
STGSYEYMAYQAEDKLTVSLKRPEDTRPNKPSSSQTYTGKKISLDFQDIEVRRVLQLLADFTGVNMVAADSVQGNITLRL
KDVPWDQALDIILKTKNLDKRRSGDVIWIAPVPELIKSEEDEAKAIAQSIKLAPIQTEYIQLSYAKVADVLKLLEDSRNV
KNAQTNGTTNTDSLALESLLSSRGSAVADTRTNTLIINDTAQNIDKVRKMVDLLDVSVKQVMIEARIVRASTGFSKEMGV
KWGILSQGVPRNNDLLVGGSDQSLWDLKTPDDDGKITVTRPDNLNVDLGVANAAGKIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVMTADKQKAKVSSGQQIPYTTTTNSAAGSTATTEFKDALLSLDVTPSITPDGKVQMQLNITSDSRGDTAPN
GEVILNKNEINTNVLVDNGETVVLGGIFEQETSNKTTKVPFFGDLPYIGRLFRNDAKVENKRELLIFVTPRIINDSRSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=422150 G0028_RS01450 WP_180044974.1 296652..298817(+) (pilQ) [Acinetobacter piscicola strain YH12207_T]
ATGAAAAATAGCATTAAAAACTTTTGGGGTGGGGACGGCATATTTATGAACACTTATTTACGTCAATTTTCAATGGCGGC
AGTATCGATTGCGGTGATGCAAGCAGCTGCTGCACAAGTGACAATGACCAATGTAGTACCCATGCAACTACCTGGGCAAG
GTACAGAAATTCGTGTCATGTTTAATGGTTTACCACCACAACCTCAAGCATACCAATTAGAGTCACCCTCTCGCTTAGTA
CTTGACTTTAATGATACGAAACAAGGATTAACACAAGCAGCAATTCCTGTGTCTACTTCAGAAGCTTCGGCAGTTAATGT
TGCTTCGGATGCACAGCGTTCACGTTTGACTGTTAATCTCAATAATAAAAGTACTTTCACAACACGTGTTGAAGGCAATA
CTTTTATTTTAAAAATTAATAGTGCCAATCAAAGCAATACTCTTGAAAATTTTGCACCAGCAACAGCAAAATCTGCACAA
GGTGTATCGGATATTGGCTTCCAACGTGGTAGCAAAGGTGAAGGTCAGGTGAGTATCAATTTGGCAGGTGTGAATACTCC
TGTCGATGTACAACAACAGGGCAGTAAAGTTGTTGTGCGCGTGTTAGGTAATAAAATTCCGACACACTTAATTCGCCGTT
TAAATGTCAATGATTTTGCAACACCTGTAGCAACTATTGATGCACACAATGATGGTAATAATGGTGTGATTACCATTCAG
TCCACTGGTAGCTATGAATATATGGCATACCAAGCTGAAGATAAACTCACAGTCAGTCTGAAACGCCCTGAAGACACACG
TCCAAACAAACCGAGTTCAAGTCAAACGTATACAGGTAAGAAAATCTCTTTAGACTTCCAAGATATTGAAGTACGCCGTG
TATTGCAGTTATTGGCTGATTTTACCGGAGTAAACATGGTTGCTGCAGACTCTGTGCAAGGCAATATTACCTTACGTTTA
AAAGATGTCCCTTGGGATCAGGCACTTGATATTATCCTGAAAACCAAAAACTTGGACAAACGCCGTAGTGGTGATGTGAT
TTGGATTGCACCTGTACCTGAGTTGATCAAGTCAGAAGAAGATGAAGCTAAAGCGATTGCGCAGAGCATTAAACTCGCAC
CGATTCAAACTGAATACATTCAACTCAGTTATGCCAAAGTTGCCGATGTACTAAAATTATTAGAGGATTCGCGCAACGTT
AAAAATGCACAGACAAATGGCACTACAAATACTGACTCATTAGCACTTGAAAGTTTACTTAGTTCACGTGGTAGTGCTGT
TGCAGATACACGAACCAATACATTGATTATCAATGATACTGCACAGAATATTGATAAAGTTCGTAAAATGGTCGATTTGC
TTGATGTGTCTGTAAAGCAAGTGATGATTGAAGCACGTATTGTCCGTGCATCTACGGGTTTCTCGAAAGAGATGGGCGTA
AAATGGGGGATTTTATCGCAAGGTGTACCACGTAATAATGACTTGCTGGTTGGTGGGAGTGACCAATCGCTTTGGGATTT
AAAAACCCCTGATGATGATGGAAAAATTACCGTTACTCGTCCAGATAACCTAAACGTTGACTTAGGTGTGGCCAATGCTG
CAGGTAAAATTGCATTTGGTTTGATTAGTTTGTCTGATTTTATGTTGGATTTAGAATTATCTGCTTTACAAGCAGATGGT
TATGGTGAGGTAATTTCGACACCAAAAGTCATGACAGCAGATAAGCAAAAAGCGAAAGTGTCTTCAGGTCAACAAATTCC
ATATACCACAACAACAAATTCTGCTGCGGGTTCAACAGCAACCACTGAATTTAAAGATGCATTACTGAGTTTAGATGTGA
CACCAAGTATTACACCTGATGGGAAAGTTCAAATGCAATTGAACATTACCAGCGATTCACGTGGTGATACAGCACCAAAT
GGTGAAGTGATTTTAAATAAAAATGAAATCAATACCAATGTGCTTGTTGATAATGGTGAAACTGTGGTGTTAGGTGGTAT
TTTTGAACAAGAAACATCAAATAAAACGACGAAAGTTCCATTCTTTGGTGATTTACCTTATATCGGGCGTTTATTCCGTA
ATGATGCTAAAGTTGAAAACAAACGAGAGTTGTTAATCTTTGTGACTCCTCGAATTATTAATGACAGTCGTAGTAGAAAT
CATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-460)

Secretin and TonB N terminus short domain (STN)

(309-351)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

71.685

100

0.72
  pilQ Acinetobacter baumannii strain A118

71.685

100

0.72
  comQ Acinetobacter baylyi ADP1

70.183

98.613

0.692
  pilQ Pseudomonas aeruginosa PAK

38.019

100

0.394
  pilQ Legionella pneumophila strain Lp02

38.406

95.7

0.368
  pilQ Legionella pneumophila strain ERS1305867

38.261

95.7

0.366

Multiple sequence alignment