Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LCGT_RS01835 Genome accession   NC_015930
Coordinates   371560..372159 (-) Length   199 a.a.
NCBI ID   WP_014024309.1    Uniprot ID   -
Organism   Lactococcus garvieae ATCC 49156     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 366560..377159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGT_RS01830 (LCGT_0360) - 368041..371460 (+) 3420 WP_014024308.1 pyruvate carboxylase -
  LCGT_RS01835 (LCGT_0361) clpP 371560..372159 (-) 600 WP_014024309.1 ATP-dependent Clp protease proteolytic subunit Regulator
  LCGT_RS01840 (LCGT_0362) - 372336..372713 (+) 378 WP_014024310.1 VOC family protein -
  LCGT_RS01845 (LCGT_0363) - 372773..373303 (+) 531 WP_003134023.1 hypothetical protein -
  LCGT_RS01850 (LCGT_0364) spx 373466..373864 (+) 399 WP_003134024.1 transcriptional regulator Spx -
  LCGT_RS01855 (LCGT_0365) - 374001..374771 (+) 771 WP_014024311.1 TatD family hydrolase -
  LCGT_RS01860 (LCGT_0366) rnmV 374771..375316 (+) 546 WP_014024312.1 ribonuclease M5 -
  LCGT_RS01865 (LCGT_0367) - 375313..376239 (+) 927 WP_003134028.1 ABC transporter ATP-binding protein -
  LCGT_RS01870 (LCGT_0368) - 376232..377002 (+) 771 WP_003134031.1 ABC transporter permease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21803.90 Da        Isoelectric Point: 4.7242

>NTDB_id=42095 LCGT_RS01835 WP_014024309.1 371560..372159(-) (clpP) [Lactococcus garvieae ATCC 49156]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSSGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=42095 LCGT_RS01835 WP_014024309.1 371560..372159(-) (clpP) [Lactococcus garvieae ATCC 49156]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGTGCATATGACATTTATAGCCGTCTACTGAA
AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTTCTGGACTTGCAATTGTCGAT
ACTATGAACTTCATCAAATCTGATGTTCAAACAATCGTTATGGGTATCGCTGCTTCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA
CACAACAAACAGACATGGCTATCGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC
TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCCCAAGAAACATTAGATTATGG
TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

89.286

98.492

0.879
  clpP Streptococcus pneumoniae D39

89.286

98.492

0.879
  clpP Streptococcus pneumoniae R6

89.286

98.492

0.879
  clpP Streptococcus pneumoniae TIGR4

89.286

98.492

0.879
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.437

100

0.874
  clpP Lactococcus lactis subsp. cremoris KW2

86.935

100

0.869
  clpP Streptococcus thermophilus LMG 18311

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMD-9

87.245

98.492

0.859
  clpP Streptococcus pyogenes JRS4

83.673

98.492

0.824
  clpP Streptococcus pyogenes MGAS315

83.673

98.492

0.824
  clpP Streptococcus mutans UA159

83.673

98.492

0.824
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.115

95.98

0.558
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

95.477

0.553

Multiple sequence alignment