Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LCGT_RS00740 Genome accession   NC_015930
Coordinates   147984..148400 (+) Length   138 a.a.
NCBI ID   WP_014024177.1    Uniprot ID   -
Organism   Lactococcus garvieae ATCC 49156     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142984..153400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGT_RS00715 (LCGT_0134) guaB 143816..145297 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  LCGT_RS00720 (LCGT_0135) rpsU 145420..145596 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  LCGT_RS00725 (LCGT_0136) comGA 145783..146727 (+) 945 WP_014024175.1 competence type IV pilus ATPase ComGA Machinery gene
  LCGT_RS00730 (LCGT_0137) comGB 146666..147685 (+) 1020 WP_016171027.1 competence type IV pilus assembly protein ComGB Machinery gene
  LCGT_RS00735 (LCGT_0138) comYC 147704..148009 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  LCGT_RS00740 (LCGT_0139) comGD 147984..148400 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  LCGT_RS00745 (LCGT_0140) comGE 148432..148665 (+) 234 WP_231844109.1 competence type IV pilus minor pilin ComGE -
  LCGT_RS00750 (LCGT_0141) comYF 148646..149086 (+) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  LCGT_RS00755 (LCGT_0143) - 149319..150164 (+) 846 WP_014024181.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LCGT_RS00760 (LCGT_0144) - 150283..151119 (-) 837 WP_014024182.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15820.51 Da        Isoelectric Point: 10.0791

>NTDB_id=42081 LCGT_RS00740 WP_014024177.1 147984..148400(+) (comGD) [Lactococcus garvieae ATCC 49156]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=42081 LCGT_RS00740 WP_014024177.1 147984..148400(+) (comGD) [Lactococcus garvieae ATCC 49156]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTGACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAGGTTCGGTCAAACAAAGTGTGAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACTCAACGCATGGCGGGACTAAAGGGACAGCAACAGACGTTGAGTGCGAGTAATGGTGCACTCTATAGCCAA
GAGGAAATGCTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

41.667

95.652

0.399
  comYD Streptococcus mutans UA159

41.667

95.652

0.399
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362

Multiple sequence alignment