Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   LCGT_RS00750 Genome accession   NC_015930
Coordinates   148646..149086 (+) Length   146 a.a.
NCBI ID   WP_014024179.1    Uniprot ID   -
Organism   Lactococcus garvieae ATCC 49156     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143646..154086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGT_RS00715 (LCGT_0134) guaB 143816..145297 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  LCGT_RS00720 (LCGT_0135) rpsU 145420..145596 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  LCGT_RS00725 (LCGT_0136) comGA 145783..146727 (+) 945 WP_014024175.1 competence type IV pilus ATPase ComGA Machinery gene
  LCGT_RS00730 (LCGT_0137) comGB 146666..147685 (+) 1020 WP_016171027.1 competence type IV pilus assembly protein ComGB Machinery gene
  LCGT_RS00735 (LCGT_0138) comYC 147704..148009 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  LCGT_RS00740 (LCGT_0139) comGD 147984..148400 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  LCGT_RS00745 (LCGT_0140) comGE 148432..148665 (+) 234 WP_231844109.1 competence type IV pilus minor pilin ComGE -
  LCGT_RS00750 (LCGT_0141) comYF 148646..149086 (+) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  LCGT_RS00755 (LCGT_0143) - 149319..150164 (+) 846 WP_014024181.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LCGT_RS00760 (LCGT_0144) - 150283..151119 (-) 837 WP_014024182.1 RluA family pseudouridine synthase -
  LCGT_RS00765 (LCGT_0145) - 151195..153483 (+) 2289 WP_014024183.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16835.45 Da        Isoelectric Point: 9.6906

>NTDB_id=42082 LCGT_RS00750 WP_014024179.1 148646..149086(+) (comYF) [Lactococcus garvieae ATCC 49156]
MFLKKNKVTAFTLLESLLALLVLVGTFSLFLGMTKMFHEEVKRATTDHTQDWQLFCSLLRSELEGASLDKVENNYLYVRK
HVNLRFGLSSQGDFRKTNANGRGYQPMIHHLKNAKISQEGEQIKIILTFEKGGDRTFLYTFPEKES

Nucleotide


Download         Length: 441 bp        

>NTDB_id=42082 LCGT_RS00750 WP_014024179.1 148646..149086(+) (comYF) [Lactococcus garvieae ATCC 49156]
TTGTTCTTGAAAAAAAATAAAGTTACAGCCTTTACACTTTTGGAATCACTCCTTGCTTTACTCGTGTTAGTGGGCACTTT
TTCTCTTTTTCTAGGTATGACTAAAATGTTTCATGAGGAAGTGAAACGTGCTACAACAGACCATACCCAAGACTGGCAAC
TTTTTTGTAGTCTACTGAGAAGTGAACTTGAGGGAGCAAGTTTAGATAAGGTAGAAAATAACTATCTTTATGTACGCAAA
CATGTTAACCTAAGGTTTGGCCTTTCCTCTCAAGGGGATTTTCGAAAAACTAACGCGAATGGACGAGGCTATCAGCCCAT
GATTCATCATTTAAAAAATGCAAAAATCAGCCAAGAGGGAGAGCAGATAAAAATTATCTTGACTTTTGAAAAAGGAGGAG
ACCGCACATTTCTTTACACGTTCCCAGAGAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(40-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

50.355

96.575

0.486
  comYF Streptococcus mutans UA159

49.645

96.575

0.479
  comGF Lactococcus lactis subsp. cremoris KW2

49.64

95.205

0.473
  comGF/cglF Streptococcus pneumoniae TIGR4

40.972

98.63

0.404
  comGF/cglF Streptococcus pneumoniae D39

40.972

98.63

0.404
  comGF/cglF Streptococcus pneumoniae Rx1

40.972

98.63

0.404
  comGF/cglF Streptococcus pneumoniae R6

40.972

98.63

0.404
  comGF/cglF Streptococcus mitis NCTC 12261

38.889

98.63

0.384
  comGF/cglF Streptococcus mitis SK321

38.194

98.63

0.377

Multiple sequence alignment